SNP Detail For rs980000
1.Mapping Information
Human SNP ID rs980000
Human chromosome chr15
Human SNP position 60608764
Pig chromosome chr1
Pig SNP position 123124314
2.Annotation Information
PubMed ID23599027
JournalHum Mol Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23599027
StudyGenome-wide association study of age at menarche in African-American women.
Disease/TraitMenarche (age at onset)
Initial sample18,089 African American individuals
Replication sample2,850 African American individuals, 87,802 European ancestry inidividuals
Region15q22.2
Chromosome idchr15
Chromosome position60608764
Reported geneRORA
Mapped geneRORA, RORA-AS1
Upstream gene id
Downstream gene id
SNP gene ids6095, 101928784
Upstream gene distance
Downstream gene distance
SNP risk allelers980000-T
SNPsrs980000
Merged0
SNP id current980000
Contextintron_variant
Intergenic0
Allele frequency0.26
P value0.000002
Pvalue mlog5.69897000433601
P value text(AA)
Or beta4.69
%95 Ci[2.75-6.63] unit increase
PlatformAffymetrix, Illumina [NR] (imputed)
CNVN
Mapped traitage at menarche
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004703
Study accessionGCST001973