Human SNP ID | rs980000 |
---|---|
Human chromosome | chr15 |
Human SNP position | 60608764 |
Pig chromosome | chr1 |
Pig SNP position | 123124314 |
PubMed ID | 23599027 |
---|---|
Journal | Hum Mol Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23599027 |
Study | Genome-wide association study of age at menarche in African-American women. |
Disease/Trait | Menarche (age at onset) |
Initial sample | 18,089 African American individuals |
Replication sample | 2,850 African American individuals, 87,802 European ancestry inidividuals |
Region | 15q22.2 |
Chromosome id | chr15 |
Chromosome position | 60608764 |
Reported gene | RORA |
Mapped gene | RORA, RORA-AS1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 6095, 101928784 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs980000-T |
SNPs | rs980000 |
Merged | 0 |
SNP id current | 980000 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.26 |
P value | 0.000002 |
Pvalue mlog | 5.69897000433601 |
P value text | (AA) |
Or beta | 4.69 |
%95 Ci | [2.75-6.63] unit increase |
Platform | Affymetrix, Illumina [NR] (imputed) |
CNV | N |
Mapped trait | age at menarche |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004703 |
Study accession | GCST001973 |