SNP Detail For rs9792269
1.Mapping Information
Human SNP ID rs9792269
Human chromosome chr8
Human SNP position 128252343
Pig chromosome chr4
Pig SNP position 12320558
2.Annotation Information
PubMed ID20190752
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/20190752
StudyMultiple common variants for celiac disease influencing immune gene expression.
Disease/TraitCeliac disease
Initial sample4,533 European ancestry cases, 10,750 European ancestry controls
Replication sample4,918 European ancestry cases, 5,684 European ancestry controls
Region8q24.21
Chromosome idchr8
Chromosome position128252343
Reported geneintergenic
Mapped geneLOC105375755 - LINC00824
Upstream gene id105375755
Downstream gene id101927774
SNP gene ids
Upstream gene distance65597
Downstream gene distance152926
SNP risk allelers9792269-?
SNPsrs9792269
Merged0
SNP id current9792269
Contextregulatory_region_variant
Intergenic1
Allele frequency0.76
P value0.000000003
Pvalue mlog8.52287874528033
P value text
Or beta1.14
%95 Ci[1.10-1.19]
PlatformIllumina [292387]
CNVN
Mapped traitceliac disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001060
Study accessionGCST000612