SNP Detail For rs9785234
1.Mapping Information
Human SNP ID rs9785234
Human chromosome chr9
Human SNP position 96167968
Pig chromosome chr10
Pig SNP position 30085728
2.Annotation Information
PubMed ID26420894
JournalNephrol Dial Transplant
Linkwww.ncbi.nlm.nih.gov/pubmed/26420894
StudyGenetic loci associated with renal function measures and chronic kidney disease in children: the Pediatric Investigation for Genetic Factors Linked with Renal Progression Consortium.
Disease/TraitGlomerular filtration rate in chronic kidney disease
Initial sampleup to 744 Central European ancestry child cases, up to 397 Turkish ancestry child cases
Replication sampleNA
Region9q22.32
Chromosome idchr9
Chromosome position96167968
Reported geneLOC158434, HSD17B3
Mapped geneEIF4BP3 - HSD17B3
Upstream gene id100128771
Downstream gene id3293
SNP gene ids
Upstream gene distance20003
Downstream gene distance67338
SNP risk allelers9785234-G
SNPsrs9785234
Merged
SNP id current9785234
Contextintergenic_variant
Intergenic1
Allele frequency0.28
P value0.000009
Pvalue mlog5.04575749056067
P value text(Turkish ancestry)
Or beta0.13
%95 Ci[0.071-0.189] unit increase
PlatformIllumina [~ 8300000] (imputed)
CNVN
Mapped traitglomerular filtration rate, chronic kidney disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005208, http://www.ebi.ac.uk/efo/EFO_0003884
Study accessionGCST003139