Human SNP ID | rs9785234 |
---|---|
Human chromosome | chr9 |
Human SNP position | 96167968 |
Pig chromosome | chr10 |
Pig SNP position | 30085728 |
PubMed ID | 26420894 |
---|---|
Journal | Nephrol Dial Transplant |
Link | www.ncbi.nlm.nih.gov/pubmed/26420894 |
Study | Genetic loci associated with renal function measures and chronic kidney disease in children: the Pediatric Investigation for Genetic Factors Linked with Renal Progression Consortium. |
Disease/Trait | Glomerular filtration rate in chronic kidney disease |
Initial sample | up to 744 Central European ancestry child cases, up to 397 Turkish ancestry child cases |
Replication sample | NA |
Region | 9q22.32 |
Chromosome id | chr9 |
Chromosome position | 96167968 |
Reported gene | LOC158434, HSD17B3 |
Mapped gene | EIF4BP3 - HSD17B3 |
Upstream gene id | 100128771 |
Downstream gene id | 3293 |
SNP gene ids | |
Upstream gene distance | 20003 |
Downstream gene distance | 67338 |
SNP risk allele | rs9785234-G |
SNPs | rs9785234 |
Merged | |
SNP id current | 9785234 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.28 |
P value | 0.000009 |
Pvalue mlog | 5.04575749056067 |
P value text | (Turkish ancestry) |
Or beta | 0.13 |
%95 Ci | [0.071-0.189] unit increase |
Platform | Illumina [~ 8300000] (imputed) |
CNV | N |
Mapped trait | glomerular filtration rate, chronic kidney disease |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005208, http://www.ebi.ac.uk/efo/EFO_0003884 |
Study accession | GCST003139 |