Human SNP ID | rs9765602 |
---|---|
Human chromosome | chr5 |
Human SNP position | 35426529 |
Pig chromosome | chr16 |
Pig SNP position | 21928224 |
PubMed ID | 26634245 |
---|---|
Journal | BMC Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/26634245 |
Study | A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry. |
Disease/Trait | Post bronchodilator FEV1 in COPD |
Initial sample | 5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases |
Replication sample | NA |
Region | 5p13.2 |
Chromosome id | chr5 |
Chromosome position | 35426529 |
Reported gene | Intergenic |
Mapped gene | PRLR - SPEF2 |
Upstream gene id | 5618 |
Downstream gene id | 79925 |
SNP gene ids | |
Upstream gene distance | 195940 |
Downstream gene distance | 191244 |
SNP risk allele | rs9765602-C |
SNPs | rs9765602 |
Merged | 0 |
SNP id current | 9765602 |
Context | upstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.842 |
P value | 0.000004 |
Pvalue mlog | 5.39794000867203 |
P value text | (AA) |
Or beta | 0.154 |
%95 Ci | NR unit increase |
Platform | Illumina [NR] (imputed) |
CNV | N |
Mapped trait | forced expiratory volume, response to bronchodilator, chronic obstructive pulmonary disease |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004314, http://purl.obolibrary.org/obo/GO_0097366, http://www.ebi.ac.uk/efo/EFO_0000341 |
Study accession | GCST003263 |