SNP Detail For rs975739
1.Mapping Information
Human SNP ID rs975739
Human chromosome chr13
Human SNP position 77807011
Pig chromosome chr11
Pig SNP position 54564162
2.Annotation Information
PubMed ID23548203
JournalHum Mol Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23548203
StudyGenome-wide association studies identify several new loci associated with pigmentation traits and skin cancer risk in European Americans.
Disease/TraitHair color
Initial sample7,070 European ancestry individuals
Replication sample4,155 European ancestry individuals
Region13q22.3
Chromosome idchr13
Chromosome position77807011
Reported geneEDNRB
Mapped geneSLAIN1 - EDNRB-AS1
Upstream gene id122060
Downstream gene id100505518
SNP gene ids
Upstream gene distance42769
Downstream gene distance11926
SNP risk allelers975739-G
SNPsrs975739
Merged0
SNP id current975739
Contextintergenic_variant
Intergenic1
Allele frequencyNR
P value0.00000000000002
Pvalue mlog13.698970004336
P value text
Or beta0.08
%95 Ci[0.060-0.100] unit increase
PlatformAffymetrix, Illumina [7588169] (imputed)
CNVN
Mapped traithair color
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003924
Study accessionGCST001932