SNP Detail For rs9757252
1.Mapping Information
Human SNP ID rs9757252
Human chromosome chr3
Human SNP position 86845328
Pig chromosome chr13
Pig SNP position 179840751
2.Annotation Information
PubMed ID22219177
JournalCarcinogenesis
Linkwww.ncbi.nlm.nih.gov/pubmed/22219177
StudyA genome-wide search for loci interacting with known prostate cancer risk-associated genetic variants.
Disease/TraitProstate cancer (gene x gene interaction)
Initial sample4,723 European ancestry cases, 4,792 European ancestry controls
Replication sampleNA
Region3p12.1 x 4q22.3
Chromosome idchr3 x 4
Chromosome position86845328 x 94641726
Reported geneVGLL3 x PDLIM5
Mapped geneLOC101927518 - LOC105377196 x PDLIM5
Upstream gene id
Downstream gene id
SNP gene ids
Upstream gene distance
Downstream gene distance
SNP risk allelers9757252-? x rs17021918-?
SNPsrs9757252 x rs17021918
Merged0
SNP id current
Contextintergenic_variant x intron_variant
Intergenic
Allele frequencyNR
P value0.000005
Pvalue mlog5.30102999566398
P value text
Or beta1.25
%95 Ci[1.13-1.37]
PlatformAffymetrix, Illumina [1117531] (imputed)
CNVN
Mapped traitprostate carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001663
Study accessionGCST001370