SNP Detail For rs9747992
1.Mapping Information
Human SNP ID rs9747992
Human chromosome chr17
Human SNP position 79831041
Pig chromosome chr12
Pig SNP position 2599630
2.Annotation Information
PubMed ID24528284
JournalBr J Clin Pharmacol
Linkwww.ncbi.nlm.nih.gov/pubmed/24528284
StudyCitalopram and escitalopram plasma drug and metabolite concentrations: genome-wide associations.
Disease/TraitResponse to serotonin reuptake inhibitors in major depressive disorder (plasma drug and metabolite levels)
Initial sample300 European ancestry Escitalpram treated individuals, 130 European ancestry Citalopram treated individuals
Replication sampleNA
Region17q25.3
Chromosome idchr17
Chromosome position79831041
Reported geneCBX4
Mapped geneLOC105371919 - CBX4
Upstream gene id105371919
Downstream gene id8535
SNP gene ids
Upstream gene distance3337
Downstream gene distance2115
SNP risk allelers9747992-?
SNPsrs9747992
Merged0
SNP id current9747992
Contextdownstream_gene_variant
Intergenic1
Allele frequency0.086
P value0.0000002
Pvalue mlog6.69897000433601
P value text(S-DCT concentration)
Or beta
%95 Ci
PlatformIllumina [7537437] (imputed)
CNVN
Mapped traitunipolar depression, response to selective serotonin reuptake inhibitor
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003761, http://www.ebi.ac.uk/efo/EFO_0005658
Study accessionGCST002549