Human SNP ID | rs974379 |
---|---|
Human chromosome | chr15 |
Human SNP position | 33212866 |
Pig chromosome | chr1 |
Pig SNP position | 153284783 |
PubMed ID | 23377640 |
---|---|
Journal | Am J Psychiatry |
Link | www.ncbi.nlm.nih.gov/pubmed/23377640 |
Study | Common genetic variation and antidepressant efficacy in major depressive disorder: a meta-analysis of three genome-wide pharmacogenetic studies. |
Disease/Trait | Major depressive disorder |
Initial sample | Up to 2,256 European ancestry cases |
Replication sample | NA |
Region | 15q13.3 |
Chromosome id | chr15 |
Chromosome position | 33212866 |
Reported gene | FMN1 |
Mapped gene | LOC105370759 - TMCO5B |
Upstream gene id | 105370759 |
Downstream gene id | 100652857 |
SNP gene ids | |
Upstream gene distance | 914 |
Downstream gene distance | 23610 |
SNP risk allele | rs974379-C |
SNPs | rs974379 |
Merged | 0 |
SNP id current | 974379 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.075 |
P value | 0.000008 |
Pvalue mlog | 5.09691001300805 |
P value text | (% improvement - 2 weeks) |
Or beta | 1.2872 |
%95 Ci | [1.17-1.4] |
Platform | Affymetrix, Illumina [1200000] (imputed) |
CNV | N |
Mapped trait | unipolar depression |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003761 |
Study accession | GCST001850 |