SNP Detail For rs974379
1.Mapping Information
Human SNP ID rs974379
Human chromosome chr15
Human SNP position 33212866
Pig chromosome chr1
Pig SNP position 153284783
2.Annotation Information
PubMed ID23377640
JournalAm J Psychiatry
Linkwww.ncbi.nlm.nih.gov/pubmed/23377640
StudyCommon genetic variation and antidepressant efficacy in major depressive disorder: a meta-analysis of three genome-wide pharmacogenetic studies.
Disease/TraitMajor depressive disorder
Initial sampleUp to 2,256 European ancestry cases
Replication sampleNA
Region15q13.3
Chromosome idchr15
Chromosome position33212866
Reported geneFMN1
Mapped geneLOC105370759 - TMCO5B
Upstream gene id105370759
Downstream gene id100652857
SNP gene ids
Upstream gene distance914
Downstream gene distance23610
SNP risk allelers974379-C
SNPsrs974379
Merged0
SNP id current974379
Contextintergenic_variant
Intergenic1
Allele frequency0.075
P value0.000008
Pvalue mlog5.09691001300805
P value text(% improvement - 2 weeks)
Or beta1.2872
%95 Ci[1.17-1.4]
PlatformAffymetrix, Illumina [1200000] (imputed)
CNVN
Mapped traitunipolar depression
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003761
Study accessionGCST001850