SNP Detail For rs972275
1.Mapping Information
Human SNP ID rs972275
Human chromosome chr6
Human SNP position 127070699
Pig chromosome chr1
Pig SNP position 39842336
2.Annotation Information
PubMed ID19084217
JournalAm J Hum Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/19084217
StudyVariants in TF and HFE explain approximately 40% of genetic variation in serum-transferrin levels.
Disease/TraitIron status biomarkers
Initial sample411 European ancestry individuals from 150 families
Replication sampleNA
Region6q22.33
Chromosome idchr6
Chromosome position127070699
Reported geneRSPO3
Mapped geneLOC105377989
Upstream gene id
Downstream gene id
SNP gene ids105377989
Upstream gene distance
Downstream gene distance
SNP risk allelers972275-?
SNPsrs972275
Merged0
SNP id current972275
Contextintergenic_variant
Intergenic0
Allele frequencyNR
P value0.000002
Pvalue mlog5.69897000433601
P value text(serum ferritin)
Or beta
%95 Ci
PlatformAffymetrix [100846]
CNVN
Mapped traitiron biomarker measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004461
Study accessionGCST000302