SNP Detail For rs971768
1.Mapping Information
Human SNP ID rs971768
Human chromosome chr22
Human SNP position 17116572
Pig chromosome chr5
Pig SNP position 71783755
2.Annotation Information
PubMed ID25130324
JournalGenes Brain Behav
Linkwww.ncbi.nlm.nih.gov/pubmed/25130324
StudyA genome-wide search for quantitative trait loci affecting the cortical surface area and thickness of Heschl__s gyrus.
Disease/TraitHeschl__s gyrus morphology
Initial sample1,778 European ancestry individuals, 1,276 individuals
Replication sampleNA
Region22q11.1
Chromosome idchr22
Chromosome position17116572
Reported geneCECR6, IL17RA
Mapped geneCECR6
Upstream gene id
Downstream gene id
SNP gene ids27439
Upstream gene distance
Downstream gene distance
SNP risk allelers971768-A
SNPsrs971768
Merged0
SNP id current971768
Context3_prime_UTR_variant
Intergenic0
Allele frequency0.07
P value0.000002
Pvalue mlog5.69897000433601
P value text(Right HG area)
Or beta13.91
%95 Ciunit increase
PlatformAffymetrix, Illumina [4103035] (imputed)
CNVN
Mapped traitHeschl__s gyrus morphology measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005852
Study accessionGCST002579