Human SNP ID | rs969413 |
---|---|
Human chromosome | chr17 |
Human SNP position | 81222014 |
Pig chromosome | chr12 |
Pig SNP position | 1445155 |
PubMed ID | 26154020 |
---|---|
Journal | Neurobiol Aging |
Link | www.ncbi.nlm.nih.gov/pubmed/26154020 |
Study | A genome-wide screening and SNPs-to-genes approach to identify novel genetic risk factors associated with frontotemporal dementia. |
Disease/Trait | Frontotemporal dementia |
Initial sample | 530 European ancestry cases, 926 European ancestry controls |
Replication sample | NA |
Region | 17q25.3 |
Chromosome id | chr17;17;17;17;17;17;17 |
Chromosome position | 81218646;81222014;81239762;81199662;81218630;81228529;81204174 |
Reported gene | CEP131, ENTHD2, C17orf89 |
Mapped gene | CEP131; CEP131; C17orf89; CEP131; CEP131; ENTHD2; CEP131 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs9319617-?; rs969413-?; rs2255166-?; rs906175-?; rs2725391-?; rs1048775-?; rs2659030-? |
SNPs | rs9319617; rs969413; rs2255166; rs906175; rs2725391; rs1048775; rs2659030 |
Merged | |
SNP id current | |
Context | intron_variant; intron_variant; non_coding_transcript_exon_variant; non_coding_transcript_exon_variant; intron_variant; 3_prime_UTR_variant; intron_variant |
Intergenic | |
Allele frequency | NR |
P value | 0.0000008 |
Pvalue mlog | 6.09691001300805 |
P value text | |
Or beta | 1.49 |
%95 Ci | [1.27-1.72] |
Platform | Illumina [2292247] (imputed) |
CNV | N |
Mapped trait | Frontotemporal dementia |
Mapped trait URI | http://www.orpha.net/ORDO/Orphanet_282 |
Study accession | GCST002960 |
PubMed ID | 26154020 |
Journal | Neurobiol Aging |
Link | www.ncbi.nlm.nih.gov/pubmed/26154020 |
Study | A genome-wide screening and SNPs-to-genes approach to identify novel genetic risk factors associated with frontotemporal dementia. |
Disease/Trait | Frontotemporal dementia |
Initial sample | 530 European ancestry cases, 926 European ancestry controls |
Replication sample | NA |
Region | 17q25.3 |
Chromosome id | chr17;17;17;17;17;17;17 |
Chromosome position | 81218646;81222014;81239762;81199662;81218630;81228529;81204174 |
Reported gene | ENTHD2, C17orf89, CEP131 |
Mapped gene | CEP131; CEP131; C17orf89; CEP131; CEP131; ENTHD2; CEP131 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs9319617-T; rs969413-A; rs2255166-C; rs906175-T; rs2725391-T; rs1048775-C; rs2659030-A |
SNPs | rs9319617; rs969413; rs2255166; rs906175; rs2725391; rs1048775; rs2659030 |
Merged | |
SNP id current | |
Context | intron_variant; intron_variant; non_coding_transcript_exon_variant; non_coding_transcript_exon_variant; intron_variant; 3_prime_UTR_variant; intron_variant |
Intergenic | |
Allele frequency | 0.43 |
P value | 0.000004 |
Pvalue mlog | 5.39794000867203 |
P value text | |
Or beta | 1.45 |
%95 Ci | [1.23-1.69] |
Platform | Illumina [2292247] (imputed) |
CNV | N |
Mapped trait | Frontotemporal dementia |
Mapped trait URI | http://www.orpha.net/ORDO/Orphanet_282 |
Study accession | GCST002960 |
PubMed ID | 26154020 |
Journal | Neurobiol Aging |
Link | www.ncbi.nlm.nih.gov/pubmed/26154020 |
Study | A genome-wide screening and SNPs-to-genes approach to identify novel genetic risk factors associated with frontotemporal dementia. |
Disease/Trait | Frontotemporal dementia |
Initial sample | 530 European ancestry cases, 926 European ancestry controls |
Replication sample | NA |
Region | 17q25.3 |
Chromosome id | chr17;17;17;17;17;17;17;17;17;17;17;17 |
Chromosome position | 81218646;81204396;81220205;81222014;81221221;81239762;81199662;81244914;81218630;81228529;81217926;81204174 |
Reported gene | CEP131, ENTHD2, C17orf89 |
Mapped gene | CEP131; CEP131; CEP131; CEP131; CEP131; C17orf89; CEP131; SLC38A10; CEP131; ENTHD2; CEP131; CEP131 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs9319617-?; rs9912789-?; rs12939525-?; rs969413-?; rs8073077-?; rs2255166-?; rs906175-?; rs2659005-?; rs2725391-?; rs1048775-?; rs9896850-?; rs2659030-? |
SNPs | rs9319617; rs9912789; rs12939525; rs969413; rs8073077; rs2255166; rs906175; rs2659005; rs2725391; rs1048775; rs9896850; rs2659030 |
Merged | |
SNP id current | |
Context | intron_variant; intron_variant; intron_variant; intron_variant; intron_variant; non_coding_transcript_exon_variant; non_coding_transcript_exon_variant; downstream_gene_variant; intron_variant; 3_prime_UTR_variant; intron_variant; intron_variant |
Intergenic | |
Allele frequency | NR |
P value | 0.000007 |
Pvalue mlog | 5.15490195998574 |
P value text | |
Or beta | 1.44 |
%95 Ci | [1.22-1.69] |
Platform | Illumina [2292247] (imputed) |
CNV | N |
Mapped trait | Frontotemporal dementia |
Mapped trait URI | http://www.orpha.net/ORDO/Orphanet_282 |
Study accession | GCST002960 |