SNP Detail For rs969088
1.Mapping Information
Human SNP ID rs969088
Human chromosome chr5
Human SNP position 26389153
Pig chromosome chr16
Pig SNP position 14221611
2.Annotation Information
PubMed ID22872573
JournalClin Cancer Res
Linkwww.ncbi.nlm.nih.gov/pubmed/22872573
StudyGenome-wide association study of prognosis in advanced non-small cell lung cancer patients receiving platinum-based chemotherapy.
Disease/TraitResponse to platinum-based chemotherapy in non-small-cell lung cancer
Initial sample528 Han Chinese ancestry cases
Replication sample340 Han Chinese ancestry cases, 409 European ancestry cases
Region5p14.1
Chromosome idchr5
Chromosome position26389153
Reported geneCDH9
Mapped geneMSNP1 - CDH9
Upstream gene id4479
Downstream gene id1007
SNP gene ids
Upstream gene distance475875
Downstream gene distance491447
SNP risk allelers969088-C
SNPsrs969088
Merged0
SNP id current969088
Contextintron_variant
Intergenic1
Allele frequencyNR
P value0.000002
Pvalue mlog5.69897000433601
P value text(Han Chinese)
Or beta1.43
%95 Ci[1.24-1.66]
PlatformNR [576351]
CNVN
Mapped traitresponse to platinum based chemotherapy, non-small cell lung carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004647, http://www.ebi.ac.uk/efo/EFO_0003060
Study accessionGCST001629
PubMed ID22872573
JournalClin Cancer Res
Linkwww.ncbi.nlm.nih.gov/pubmed/22872573
StudyGenome-wide association study of prognosis in advanced non-small cell lung cancer patients receiving platinum-based chemotherapy.
Disease/TraitResponse to platinum-based chemotherapy in non-small-cell lung cancer
Initial sample528 Han Chinese ancestry cases
Replication sample340 Han Chinese ancestry cases, 409 European ancestry cases
Region5p14.1
Chromosome idchr5
Chromosome position26389153
Reported geneCDH9
Mapped geneMSNP1 - CDH9
Upstream gene id4479
Downstream gene id1007
SNP gene ids
Upstream gene distance475875
Downstream gene distance491447
SNP risk allelers969088-C
SNPsrs969088
Merged0
SNP id current969088
Contextintron_variant
Intergenic1
Allele frequencyNR
P value0.000003
Pvalue mlog5.52287874528033
P value text(Han Chinese + EA)
Or beta1.4
%95 Ci[1.22-1.61]
PlatformNR [576351]
CNVN
Mapped traitresponse to platinum based chemotherapy, non-small cell lung carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004647, http://www.ebi.ac.uk/efo/EFO_0003060
Study accessionGCST001629