Human SNP ID | rs969088 |
---|---|
Human chromosome | chr5 |
Human SNP position | 26389153 |
Pig chromosome | chr16 |
Pig SNP position | 14221611 |
PubMed ID | 22872573 |
---|---|
Journal | Clin Cancer Res |
Link | www.ncbi.nlm.nih.gov/pubmed/22872573 |
Study | Genome-wide association study of prognosis in advanced non-small cell lung cancer patients receiving platinum-based chemotherapy. |
Disease/Trait | Response to platinum-based chemotherapy in non-small-cell lung cancer |
Initial sample | 528 Han Chinese ancestry cases |
Replication sample | 340 Han Chinese ancestry cases, 409 European ancestry cases |
Region | 5p14.1 |
Chromosome id | chr5 |
Chromosome position | 26389153 |
Reported gene | CDH9 |
Mapped gene | MSNP1 - CDH9 |
Upstream gene id | 4479 |
Downstream gene id | 1007 |
SNP gene ids | |
Upstream gene distance | 475875 |
Downstream gene distance | 491447 |
SNP risk allele | rs969088-C |
SNPs | rs969088 |
Merged | 0 |
SNP id current | 969088 |
Context | intron_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.000002 |
Pvalue mlog | 5.69897000433601 |
P value text | (Han Chinese) |
Or beta | 1.43 |
%95 Ci | [1.24-1.66] |
Platform | NR [576351] |
CNV | N |
Mapped trait | response to platinum based chemotherapy, non-small cell lung carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004647, http://www.ebi.ac.uk/efo/EFO_0003060 |
Study accession | GCST001629 |
PubMed ID | 22872573 |
Journal | Clin Cancer Res |
Link | www.ncbi.nlm.nih.gov/pubmed/22872573 |
Study | Genome-wide association study of prognosis in advanced non-small cell lung cancer patients receiving platinum-based chemotherapy. |
Disease/Trait | Response to platinum-based chemotherapy in non-small-cell lung cancer |
Initial sample | 528 Han Chinese ancestry cases |
Replication sample | 340 Han Chinese ancestry cases, 409 European ancestry cases |
Region | 5p14.1 |
Chromosome id | chr5 |
Chromosome position | 26389153 |
Reported gene | CDH9 |
Mapped gene | MSNP1 - CDH9 |
Upstream gene id | 4479 |
Downstream gene id | 1007 |
SNP gene ids | |
Upstream gene distance | 475875 |
Downstream gene distance | 491447 |
SNP risk allele | rs969088-C |
SNPs | rs969088 |
Merged | 0 |
SNP id current | 969088 |
Context | intron_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.000003 |
Pvalue mlog | 5.52287874528033 |
P value text | (Han Chinese + EA) |
Or beta | 1.4 |
%95 Ci | [1.22-1.61] |
Platform | NR [576351] |
CNV | N |
Mapped trait | response to platinum based chemotherapy, non-small cell lung carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004647, http://www.ebi.ac.uk/efo/EFO_0003060 |
Study accession | GCST001629 |