SNP Detail For rs9686661
1.Mapping Information
Human SNP ID rs9686661
Human chromosome chr5
Human SNP position 56565959
Pig chromosome chr16
Pig SNP position 37894380
2.Annotation Information
PubMed ID20686565
JournalNature
Linkwww.ncbi.nlm.nih.gov/pubmed/20686565
StudyBiological, clinical and population relevance of 95 loci for blood lipids.
Disease/TraitTriglycerides
Initial sample96,598 European ancestry individuals
Replication sampleNA
Region5q11.2
Chromosome idchr5
Chromosome position56565959
Reported geneMAP3K1, ANKRD55
Mapped geneLOC101928448
Upstream gene id
Downstream gene id
SNP gene ids101928448
Upstream gene distance
Downstream gene distance
SNP risk allelers9686661-T
SNPsrs9686661
Merged0
SNP id current9686661
Contextintron_variant
Intergenic0
Allele frequency0.2
P value0.0000000001
Pvalue mlog10
P value text
Or beta2.57
%95 Ci[1.61-3.53] mg/dL increase
PlatformAffymetrix, Illumina, Perlegen [~ 2600000] (imputed)
CNVN
Mapped traittriglyceride measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004530
Study accessionGCST000758
PubMed ID24097068
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/24097068
StudyDiscovery and refinement of loci associated with lipid levels.
Disease/TraitTriglycerides
Initial sample94,595 European ancestry individuals
Replication sample93,982 European ancestry individuals
Region5q11.2
Chromosome idchr5
Chromosome position56565959
Reported geneMAP3K1
Mapped geneLOC101928448
Upstream gene id
Downstream gene id
SNP gene ids101928448
Upstream gene distance
Downstream gene distance
SNP risk allelers9686661-T
SNPsrs9686661
Merged0
SNP id current9686661
Contextintron_variant
Intergenic0
Allele frequency0.2
P value0.0000000000000003
Pvalue mlog15.5228787452803
P value text
Or beta0.038
%95 Ci[NR] mg/dL increase
PlatformNR [NR] (imputed)
CNVN
Mapped traittriglyceride measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004530
Study accessionGCST002216