Human SNP ID | rs9686661 |
---|---|
Human chromosome | chr5 |
Human SNP position | 56565959 |
Pig chromosome | chr16 |
Pig SNP position | 37894380 |
PubMed ID | 20686565 |
---|---|
Journal | Nature |
Link | www.ncbi.nlm.nih.gov/pubmed/20686565 |
Study | Biological, clinical and population relevance of 95 loci for blood lipids. |
Disease/Trait | Triglycerides |
Initial sample | 96,598 European ancestry individuals |
Replication sample | NA |
Region | 5q11.2 |
Chromosome id | chr5 |
Chromosome position | 56565959 |
Reported gene | MAP3K1, ANKRD55 |
Mapped gene | LOC101928448 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 101928448 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs9686661-T |
SNPs | rs9686661 |
Merged | 0 |
SNP id current | 9686661 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.2 |
P value | 0.0000000001 |
Pvalue mlog | 10 |
P value text | |
Or beta | 2.57 |
%95 Ci | [1.61-3.53] mg/dL increase |
Platform | Affymetrix, Illumina, Perlegen [~ 2600000] (imputed) |
CNV | N |
Mapped trait | triglyceride measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004530 |
Study accession | GCST000758 |
PubMed ID | 24097068 |
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/24097068 |
Study | Discovery and refinement of loci associated with lipid levels. |
Disease/Trait | Triglycerides |
Initial sample | 94,595 European ancestry individuals |
Replication sample | 93,982 European ancestry individuals |
Region | 5q11.2 |
Chromosome id | chr5 |
Chromosome position | 56565959 |
Reported gene | MAP3K1 |
Mapped gene | LOC101928448 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 101928448 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs9686661-T |
SNPs | rs9686661 |
Merged | 0 |
SNP id current | 9686661 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.2 |
P value | 0.0000000000000003 |
Pvalue mlog | 15.5228787452803 |
P value text | |
Or beta | 0.038 |
%95 Ci | [NR] mg/dL increase |
Platform | NR [NR] (imputed) |
CNV | N |
Mapped trait | triglyceride measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004530 |
Study accession | GCST002216 |