SNP Detail For rs968451
1.Mapping Information
Human SNP ID rs968451
Human chromosome chr22
Human SNP position 39274846
Pig chromosome chr5
Pig SNP position 6251251
2.Annotation Information
PubMed ID21399635
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/21399635
StudyGenome-wide association study identifies 12 new susceptibility loci for primary biliary cirrhosis.
Disease/TraitPrimary biliary cirrhosis
Initial sample1,840 European ancestry cases, 5,163 European ancestry controls and (Liu et al)
Replication sample620 European ancestry cases, 2,514 European ancestry controls
Region22q13.1
Chromosome idchr22
Chromosome position39274846
Reported geneMAP3K7IP1
Mapped genePDGFB - RPL3
Upstream gene id5155
Downstream gene id6122
SNP gene ids
Upstream gene distance29894
Downstream gene distance38036
SNP risk allelers968451-T
SNPsrs968451
Merged0
SNP id current968451
Contextintergenic_variant
Intergenic1
Allele frequency0.19
P value0.000000001
Pvalue mlog9
P value text
Or beta1.27
%95 Ci[1.18-1.38]
PlatformIllumina [507467]
CNVN
Mapped traitbiliary liver cirrhosis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004267
Study accessionGCST001010