Human SNP ID | rs968451 |
---|---|
Human chromosome | chr22 |
Human SNP position | 39274846 |
Pig chromosome | chr5 |
Pig SNP position | 6251251 |
PubMed ID | 21399635 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/21399635 |
Study | Genome-wide association study identifies 12 new susceptibility loci for primary biliary cirrhosis. |
Disease/Trait | Primary biliary cirrhosis |
Initial sample | 1,840 European ancestry cases, 5,163 European ancestry controls and (Liu et al) |
Replication sample | 620 European ancestry cases, 2,514 European ancestry controls |
Region | 22q13.1 |
Chromosome id | chr22 |
Chromosome position | 39274846 |
Reported gene | MAP3K7IP1 |
Mapped gene | PDGFB - RPL3 |
Upstream gene id | 5155 |
Downstream gene id | 6122 |
SNP gene ids | |
Upstream gene distance | 29894 |
Downstream gene distance | 38036 |
SNP risk allele | rs968451-T |
SNPs | rs968451 |
Merged | 0 |
SNP id current | 968451 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.19 |
P value | 0.000000001 |
Pvalue mlog | 9 |
P value text | |
Or beta | 1.27 |
%95 Ci | [1.18-1.38] |
Platform | Illumina [507467] |
CNV | N |
Mapped trait | biliary liver cirrhosis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004267 |
Study accession | GCST001010 |