SNP Detail For rs9675861
1.Mapping Information
Human SNP ID rs9675861
Human chromosome chr18
Human SNP position 7172525
Pig chromosome chr6
Pig SNP position 93481744
2.Annotation Information
PubMed ID26053186
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/26053186
StudyMercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.
Disease/Trait3-hydroxy-1-methylpropylmercapturic acid levels in smokers
Initial sample361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals
Replication sampleNA
Region18p11.31
Chromosome idchr18
Chromosome position7172525
Reported geneNR
Mapped geneSLC25A51P2 - LRRC30
Upstream gene id645423
Downstream gene id339291
SNP gene ids
Upstream gene distance36644
Downstream gene distance58614
SNP risk allelers9675861-?
SNPsrs9675861
Merged
SNP id current9675861
Contextintergenic_variant
Intergenic1
Allele frequencyNR
P value0.000001
Pvalue mlog6
P value text(Japanese)
Or beta0.395
%95 Ci[NR] unit decrease
PlatformIllumina [up to 11892802] (imputed)
CNVN
Mapped traitsmoking behavior, 3-hydroxy-1-methylpropylmercapturic acid measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004318, http://www.ebi.ac.uk/efo/EFO_0007015
Study accessionGCST002957