Human SNP ID | rs9653442 |
---|---|
Human chromosome | chr2 |
Human SNP position | 100208905 |
Pig chromosome | chr3 |
Pig SNP position | 56666356 |
PubMed ID | 17554260 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/17554260 |
Study | Robust associations of four new chromosome regions from genome-wide analyses of type 1 diabetes. |
Disease/Trait | Type 1 diabetes |
Initial sample | 2,000 European ancestry cases, 3,000 European ancestry controls |
Replication sample | 2,997 European ancestry trios, 4,000 European ancestry cases, 5,000 European ancestry controls |
Region | 2q11.2 |
Chromosome id | chr2 |
Chromosome position | 100208905 |
Reported gene | AFF3, LOC150577 |
Mapped gene | LINC01104 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 150577 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs9653442-G |
SNPs | rs9653442 |
Merged | 0 |
SNP id current | 9653442 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.46 |
P value | 0.000005 |
Pvalue mlog | 5.30102999566398 |
P value text | |
Or beta | 1.11 |
%95 Ci | [1.05-1.17] |
Platform | Affymetrix [NR] |
CNV | N |
Mapped trait | type I diabetes mellitus |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001359 |
Study accession | GCST000038 |
PubMed ID | 24390342 |
Journal | Nature |
Link | www.ncbi.nlm.nih.gov/pubmed/24390342 |
Study | Genetics of rheumatoid arthritis contributes to biology and drug discovery. |
Disease/Trait | Rheumatoid arthritis |
Initial sample | up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls |
Replication sample | up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls |
Region | 2q11.2 |
Chromosome id | chr2 |
Chromosome position | 100208905 |
Reported gene | AFF3 |
Mapped gene | LINC01104 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 150577 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs9653442-C |
SNPs | rs9653442 |
Merged | 0 |
SNP id current | 9653442 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.46 |
P value | 0.000000000000000002 |
Pvalue mlog | 17.698970004336 |
P value text | |
Or beta | 1.11 |
%95 Ci | [1.09-1.14] |
Platform | Affymetrix, Illumina [up to 9739303] (imputed) |
CNV | N |
Mapped trait | rheumatoid arthritis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000685 |
Study accession | GCST002318 |
PubMed ID | 24390342 |
Journal | Nature |
Link | www.ncbi.nlm.nih.gov/pubmed/24390342 |
Study | Genetics of rheumatoid arthritis contributes to biology and drug discovery. |
Disease/Trait | Rheumatoid arthritis |
Initial sample | up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls |
Replication sample | up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls |
Region | 2q11.2 |
Chromosome id | chr2 |
Chromosome position | 100208905 |
Reported gene | AFF3 |
Mapped gene | LINC01104 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 150577 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs9653442-C |
SNPs | rs9653442 |
Merged | 0 |
SNP id current | 9653442 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.46 |
P value | 0.00000000000001 |
Pvalue mlog | 14 |
P value text | (EA) |
Or beta | 1.12 |
%95 Ci | [1.09-1.15] |
Platform | Affymetrix, Illumina [up to 9739303] (imputed) |
CNV | N |
Mapped trait | rheumatoid arthritis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000685 |
Study accession | GCST002318 |