SNP Detail For rs9647570
1.Mapping Information
Human SNP ID rs9647570
Human chromosome chr5
Human SNP position 167943258
Pig chromosome chr16
Pig SNP position 60537847
2.Annotation Information
PubMed ID25231870
JournalNature
Linkwww.ncbi.nlm.nih.gov/pubmed/25231870
StudyParent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.
Disease/TraitMenarche (age at onset)
Initial sampleUp to 182,413 European ancestry females
Replication sampleNA
Region5q34
Chromosome idchr5
Chromosome position167943258
Reported geneTENM2
Mapped geneTENM2, LOC105377709
Upstream gene id
Downstream gene id
SNP gene ids57451, 105377709
Upstream gene distance
Downstream gene distance
SNP risk allelers9647570-G
SNPsrs9647570
Merged0
SNP id current9647570
Contextintron_variant
Intergenic0
Allele frequency0.14
P value0.00000000001
Pvalue mlog11
P value text
Or beta0.05
%95 Ci[0.036-0.064] unit increase
PlatformAffymetrix, Illumina [2441815] (imputed)
CNVN
Mapped traitage at menarche
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004703
Study accessionGCST002541