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SNP Detail For rs9646096
1.Mapping Information
| Human SNP ID | rs9646096 |
|---|---|
| Human chromosome | chr13 |
| Human SNP position | 37491309 |
| Pig chromosome | chr11 |
| Pig SNP position | 13164854 |
2.Annotation Information
| PubMed ID | 23326517 |
|---|---|
| Journal | PLoS One |
| Link | www.ncbi.nlm.nih.gov/pubmed/23326517 |
| Study | Insights into the genetic architecture of early stage age-related macular degeneration: a genome-wide association study meta-analysis. |
| Disease/Trait | Age-related macular degeneration |
| Initial sample | 3,772 European ancestry cases, 16,033 European ancestry controls |
| Replication sample | 264 Asian ancestry cases, 3,926 Asian ancestry controls |
| Region | 13q13.3 |
| Chromosome id | chr13 |
| Chromosome position | 37491309 |
| Reported gene | POSTN, TRPC4 |
| Mapped gene | LINC01048 - LINC00547 |
| Upstream gene id | 103695431 |
| Downstream gene id | 400121 |
| SNP gene ids | |
| Upstream gene distance | 6525 |
| Downstream gene distance | 43631 |
| SNP risk allele | rs9646096-? |
| SNPs | rs9646096 |
| Merged | 0 |
| SNP id current | 9646096 |
| Context | intergenic_variant |
| Intergenic | 1 |
| Allele frequency | 0.05 |
| P value | 0.000006 |
| Pvalue mlog | 5.22184874961635 |
| P value text | (EA) |
| Or beta | 1.35 |
| %95 Ci | [1.19-1.54] |
| Platform | Affymetrix, Illumina [~ 2500000] (imputed) |
| CNV | N |
| Mapped trait | age-related macular degeneration |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001365 |
| Study accession | GCST001814 |
| PubMed ID | 23326517 |
| Journal | PLoS One |
| Link | www.ncbi.nlm.nih.gov/pubmed/23326517 |
| Study | Insights into the genetic architecture of early stage age-related macular degeneration: a genome-wide association study meta-analysis. |
| Disease/Trait | Age-related macular degeneration |
| Initial sample | 3,772 European ancestry cases, 16,033 European ancestry controls |
| Replication sample | 264 Asian ancestry cases, 3,926 Asian ancestry controls |
| Region | 13q13.3 |
| Chromosome id | chr13 |
| Chromosome position | 37491309 |
| Reported gene | POSTN, TRPC4 |
| Mapped gene | LINC01048 - LINC00547 |
| Upstream gene id | 103695431 |
| Downstream gene id | 400121 |
| SNP gene ids | |
| Upstream gene distance | 6525 |
| Downstream gene distance | 43631 |
| SNP risk allele | rs9646096-? |
| SNPs | rs9646096 |
| Merged | 0 |
| SNP id current | 9646096 |
| Context | intergenic_variant |
| Intergenic | 1 |
| Allele frequency | 0.05 |
| P value | 0.000006 |
| Pvalue mlog | 5.22184874961635 |
| P value text | |
| Or beta | 1.35 |
| %95 Ci | [1.19-1.54] |
| Platform | Affymetrix, Illumina [~ 2500000] (imputed) |
| CNV | N |
| Mapped trait | age-related macular degeneration |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001365 |
| Study accession | GCST001814 |
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and Xi'an University of Technology ©2014-2017 All Rights Reserved.
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