SNP Detail For rs963731
1.Mapping Information
Human SNP ID rs963731
Human chromosome chr2
Human SNP position 38989732
Pig chromosome chr3
Pig SNP position 107461000
2.Annotation Information
PubMed ID26077951
JournalNat Commun
Linkwww.ncbi.nlm.nih.gov/pubmed/26077951
StudyGenome-wide association study of corticobasal degeneration identifies risk variants shared with progressive supranuclear palsy.
Disease/TraitCorticobasal degeneration
Initial sample152 cases, 3,111 controls
Replication sample67 cases, 457 controls
Region2p22.1
Chromosome idchr2
Chromosome position38989732
Reported geneSOS1
Mapped geneSOS1
Upstream gene id
Downstream gene id
SNP gene ids6654
Upstream gene distance
Downstream gene distance
SNP risk allelers963731-?
SNPsrs963731
Merged
SNP id current963731
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.0000002
Pvalue mlog6.69897000433601
P value text
Or beta2.41
%95 Ci[NR]
PlatformIllumina [533898] (imputed)
CNVN
Mapped traitCorticobasal degeneration
Mapped trait URIhttp://www.orpha.net/ORDO/Orphanet_278
Study accessionGCST002971
PubMed ID26077951
JournalNat Commun
Linkwww.ncbi.nlm.nih.gov/pubmed/26077951
StudyGenome-wide association study of corticobasal degeneration identifies risk variants shared with progressive supranuclear palsy.
Disease/TraitCorticobasal degeneration
Initial sample152 cases, 1,986 controls
Replication sampleNA
Region2p22.1
Chromosome idchr2
Chromosome position38989732
Reported geneSOS1
Mapped geneSOS1
Upstream gene id
Downstream gene id
SNP gene ids6654
Upstream gene distance
Downstream gene distance
SNP risk allelers963731-?
SNPsrs963731
Merged
SNP id current963731
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.000003
Pvalue mlog5.52287874528033
P value text
Or beta2.42
%95 Ci[1.65-3.53]
PlatformIllumina [533898] (imputed)
CNVN
Mapped traitCorticobasal degeneration
Mapped trait URIhttp://www.orpha.net/ORDO/Orphanet_278
Study accessionGCST002970