Human SNP ID | rs963731 |
---|---|
Human chromosome | chr2 |
Human SNP position | 38989732 |
Pig chromosome | chr3 |
Pig SNP position | 107461000 |
PubMed ID | 26077951 |
---|---|
Journal | Nat Commun |
Link | www.ncbi.nlm.nih.gov/pubmed/26077951 |
Study | Genome-wide association study of corticobasal degeneration identifies risk variants shared with progressive supranuclear palsy. |
Disease/Trait | Corticobasal degeneration |
Initial sample | 152 cases, 3,111 controls |
Replication sample | 67 cases, 457 controls |
Region | 2p22.1 |
Chromosome id | chr2 |
Chromosome position | 38989732 |
Reported gene | SOS1 |
Mapped gene | SOS1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 6654 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs963731-? |
SNPs | rs963731 |
Merged | |
SNP id current | 963731 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.0000002 |
Pvalue mlog | 6.69897000433601 |
P value text | |
Or beta | 2.41 |
%95 Ci | [NR] |
Platform | Illumina [533898] (imputed) |
CNV | N |
Mapped trait | Corticobasal degeneration |
Mapped trait URI | http://www.orpha.net/ORDO/Orphanet_278 |
Study accession | GCST002971 |
PubMed ID | 26077951 |
Journal | Nat Commun |
Link | www.ncbi.nlm.nih.gov/pubmed/26077951 |
Study | Genome-wide association study of corticobasal degeneration identifies risk variants shared with progressive supranuclear palsy. |
Disease/Trait | Corticobasal degeneration |
Initial sample | 152 cases, 1,986 controls |
Replication sample | NA |
Region | 2p22.1 |
Chromosome id | chr2 |
Chromosome position | 38989732 |
Reported gene | SOS1 |
Mapped gene | SOS1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 6654 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs963731-? |
SNPs | rs963731 |
Merged | |
SNP id current | 963731 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.000003 |
Pvalue mlog | 5.52287874528033 |
P value text | |
Or beta | 2.42 |
%95 Ci | [1.65-3.53] |
Platform | Illumina [533898] (imputed) |
CNV | N |
Mapped trait | Corticobasal degeneration |
Mapped trait URI | http://www.orpha.net/ORDO/Orphanet_278 |
Study accession | GCST002970 |