Human SNP ID | rs962528 |
---|---|
Human chromosome | chr2 |
Human SNP position | 6556956 |
Pig chromosome | chr3 |
Pig SNP position | 138065849 |
PubMed ID | 22589738 |
---|---|
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/22589738 |
Study | Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women. |
Disease/Trait | Visceral fat |
Initial sample | 5,560 European ancestry female individuals, 4,997 European ancestry male individuals |
Replication sample | NA |
Region | 2p25.2 |
Chromosome id | chr2 |
Chromosome position | 6556956 |
Reported gene | LOC129607 |
Mapped gene | LOC105373403 - LINC01246 |
Upstream gene id | 105373403 |
Downstream gene id | 102800315 |
SNP gene ids | |
Upstream gene distance | 125102 |
Downstream gene distance | 69153 |
SNP risk allele | rs962528-T |
SNPs | rs962528 |
Merged | 0 |
SNP id current | 962528 |
Context | regulatory_region_variant |
Intergenic | 1 |
Allele frequency | 0.32 |
P value | 0.000008 |
Pvalue mlog | 5.09691001300805 |
P value text | (overall) |
Or beta | |
%95 Ci | |
Platform | Affymetrix, Illumina [2500000] (imputed) |
CNV | N |
Mapped trait | visceral adipose tissue measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004765 |
Study accession | GCST001525 |