SNP Detail For rs962528
1.Mapping Information
Human SNP ID rs962528
Human chromosome chr2
Human SNP position 6556956
Pig chromosome chr3
Pig SNP position 138065849
2.Annotation Information
PubMed ID22589738
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22589738
StudyGenome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.
Disease/TraitVisceral fat
Initial sample5,560 European ancestry female individuals, 4,997 European ancestry male individuals
Replication sampleNA
Region2p25.2
Chromosome idchr2
Chromosome position6556956
Reported geneLOC129607
Mapped geneLOC105373403 - LINC01246
Upstream gene id105373403
Downstream gene id102800315
SNP gene ids
Upstream gene distance125102
Downstream gene distance69153
SNP risk allelers962528-T
SNPsrs962528
Merged0
SNP id current962528
Contextregulatory_region_variant
Intergenic1
Allele frequency0.32
P value0.000008
Pvalue mlog5.09691001300805
P value text(overall)
Or beta
%95 Ci
PlatformAffymetrix, Illumina [2500000] (imputed)
CNVN
Mapped traitvisceral adipose tissue measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004765
Study accessionGCST001525