SNP Detail For rs9619497
1.Mapping Information
Human SNP ID rs9619497
Human chromosome chr22
Human SNP position 34975259
Pig chromosome chr5
Pig SNP position 10340845
2.Annotation Information
PubMed ID23319000
JournalMol Psychiatry
Linkwww.ncbi.nlm.nih.gov/pubmed/23319000
StudyGenome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.
Disease/TraitMetabolite levels (HVA-5-HIAA Factor score)
Initial sampleup to 398 European ancestry individuals
Replication sampleNA
Region22q12.3
Chromosome idchr22
Chromosome position34975259
Reported geneintergenic
Mapped geneLOC105373016 - ISX
Upstream gene id105373016
Downstream gene id91464
SNP gene ids
Upstream gene distance7241
Downstream gene distance90877
SNP risk allelers9619497-A
SNPsrs9619497
Merged0
SNP id current9619497
Contextintergenic_variant
Intergenic1
Allele frequency
P value0.000005
Pvalue mlog5.30102999566398
P value text
Or beta0.2273
%95 Ciunit increase
PlatformIllumina [5767231] (imputed)
CNVN
Mapped traitHVA measurement, 5-HIAA measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005131, http://www.ebi.ac.uk/efo/EFO_0005132
Study accessionGCST001817