Human SNP ID | rs9619497 |
---|---|
Human chromosome | chr22 |
Human SNP position | 34975259 |
Pig chromosome | chr5 |
Pig SNP position | 10340845 |
PubMed ID | 23319000 |
---|---|
Journal | Mol Psychiatry |
Link | www.ncbi.nlm.nih.gov/pubmed/23319000 |
Study | Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid. |
Disease/Trait | Metabolite levels (HVA-5-HIAA Factor score) |
Initial sample | up to 398 European ancestry individuals |
Replication sample | NA |
Region | 22q12.3 |
Chromosome id | chr22 |
Chromosome position | 34975259 |
Reported gene | intergenic |
Mapped gene | LOC105373016 - ISX |
Upstream gene id | 105373016 |
Downstream gene id | 91464 |
SNP gene ids | |
Upstream gene distance | 7241 |
Downstream gene distance | 90877 |
SNP risk allele | rs9619497-A |
SNPs | rs9619497 |
Merged | 0 |
SNP id current | 9619497 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | |
P value | 0.000005 |
Pvalue mlog | 5.30102999566398 |
P value text | |
Or beta | 0.2273 |
%95 Ci | unit increase |
Platform | Illumina [5767231] (imputed) |
CNV | N |
Mapped trait | HVA measurement, 5-HIAA measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005131, http://www.ebi.ac.uk/efo/EFO_0005132 |
Study accession | GCST001817 |