SNP Detail For rs9611198
1.Mapping Information
Human SNP ID rs9611198
Human chromosome chr22
Human SNP position 39559868
Pig chromosome chr5
Pig SNP position 6009490
2.Annotation Information
PubMed ID22883433
JournalBiol Psychiatry
Linkwww.ncbi.nlm.nih.gov/pubmed/22883433
StudyGenome-wide association study implicates HLA-C*01:02 as a risk factor at the major histocompatibility complex locus in schizophrenia.
Disease/TraitSchizophrenia
Initial sample1,606 European ancestry cases, 1,794 European ancestry controls
Replication sample13,195 European ancestry cases, 31,021 European ancestry controls
Region22q13.1
Chromosome idchr22
Chromosome position39559868
Reported geneCACNA1I
Mapped geneCACNA1I
Upstream gene id
Downstream gene id
SNP gene ids8911
Upstream gene distance
Downstream gene distance
SNP risk allelers9611198-C
SNPsrs9611198
Merged0
SNP id current9611198
Contextregulatory_region_variant
Intergenic0
Allele frequency0.458
P value0.000008
Pvalue mlog5.09691001300805
P value text
Or beta1.22
%95 Ci[1.11-1.34]
PlatformAffymetrix [6212339]
CNVN
Mapped traitschizophrenia
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000692
Study accessionGCST001631