SNP Detail For rs960902
1.Mapping Information
Human SNP ID rs960902
Human chromosome chr2
Human SNP position 37504522
Pig chromosome chr3
Pig SNP position 109160714
2.Annotation Information
PubMed ID22569225
JournalPharmacogenet Genomics
Linkwww.ncbi.nlm.nih.gov/pubmed/22569225
StudyInvestigation of single nucleotide polymorphisms and biological pathways associated with response to TNFα inhibitors in patients with rheumatoid arthritis.
Disease/TraitResponse to TNF-alpha inhibitors in rheumatoid arthritis
Initial sample196 European ancestry cases
Replication sampleNA
Region2p22.2
Chromosome idchr2
Chromosome position37504522
Reported geneQPCT
Mapped geneLOC105374464
Upstream gene id
Downstream gene id
SNP gene ids105374464
Upstream gene distance
Downstream gene distance
SNP risk allelers960902-?
SNPsrs960902
Merged0
SNP id current960902
Contextintergenic_variant
Intergenic0
Allele frequencyNR
P value0.000008
Pvalue mlog5.09691001300805
P value text(Relative change in DAS28)
Or beta
%95 Ci
PlatformIllumina [486450]
CNVN
Mapped traitrheumatoid arthritis, response to TNF antagonist
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000685, http://www.ebi.ac.uk/efo/EFO_0004653
Study accessionGCST001510