SNP Detail For rs960709
1.Mapping Information
Human SNP ID rs960709
Human chromosome chr5
Human SNP position 151081488
Pig chromosome chr16
Pig SNP position 78339211
2.Annotation Information
PubMed ID23740937
JournalHum Mol Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23740937
StudyA systemic sclerosis and systemic lupus erythematosus pan-meta-GWAS reveals new shared susceptibility loci.
Disease/TraitSystemic lupus erythematosus and Systemic sclerosis
Initial sampleup to 2,761 European ancestry systemic sclerosis cases, 769 European ancestry systemic lupus erythematosus cases, 7,381 European ancestry controls
Replication sampleup to 1,578 European ancestry systemic sclerosis cases, 1,727 European ancestry systemic lupus erythematosus cases, 6,893 European ancestry controls
Region5q33.1
Chromosome idchr5
Chromosome position151081488
Reported geneTNIP1
Mapped geneTNIP1
Upstream gene id
Downstream gene id
SNP gene ids10318
Upstream gene distance
Downstream gene distance
SNP risk allelers960709-?
SNPsrs960709
Merged0
SNP id current960709
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.00000002
Pvalue mlog7.69897000433601
P value text
Or beta1.212
%95 Ci[NR]
PlatformIllumina [NR]
CNVN
Mapped traitsystemic scleroderma, systemic lupus erythematosus
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000717, http://www.ebi.ac.uk/efo/EFO_0002690
Study accessionGCST002069