Human SNP ID | rs960709 |
---|---|
Human chromosome | chr5 |
Human SNP position | 151081488 |
Pig chromosome | chr16 |
Pig SNP position | 78339211 |
PubMed ID | 23740937 |
---|---|
Journal | Hum Mol Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23740937 |
Study | A systemic sclerosis and systemic lupus erythematosus pan-meta-GWAS reveals new shared susceptibility loci. |
Disease/Trait | Systemic lupus erythematosus and Systemic sclerosis |
Initial sample | up to 2,761 European ancestry systemic sclerosis cases, 769 European ancestry systemic lupus erythematosus cases, 7,381 European ancestry controls |
Replication sample | up to 1,578 European ancestry systemic sclerosis cases, 1,727 European ancestry systemic lupus erythematosus cases, 6,893 European ancestry controls |
Region | 5q33.1 |
Chromosome id | chr5 |
Chromosome position | 151081488 |
Reported gene | TNIP1 |
Mapped gene | TNIP1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 10318 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs960709-? |
SNPs | rs960709 |
Merged | 0 |
SNP id current | 960709 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.00000002 |
Pvalue mlog | 7.69897000433601 |
P value text | |
Or beta | 1.212 |
%95 Ci | [NR] |
Platform | Illumina [NR] |
CNV | N |
Mapped trait | systemic scleroderma, systemic lupus erythematosus |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000717, http://www.ebi.ac.uk/efo/EFO_0002690 |
Study accession | GCST002069 |