SNP Detail For rs9603616
1.Mapping Information
Human SNP ID rs9603616
Human chromosome chr13
Human SNP position 39793932
Pig chromosome chr11
Pig SNP position 14929590
2.Annotation Information
PubMed ID24390342
JournalNature
Linkwww.ncbi.nlm.nih.gov/pubmed/24390342
StudyGenetics of rheumatoid arthritis contributes to biology and drug discovery.
Disease/TraitRheumatoid arthritis
Initial sampleup to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls
Replication sampleup to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls
Region13q14.11
Chromosome idchr13
Chromosome position39793932
Reported geneCOG6
Mapped geneCOG6 - LOC105370171
Upstream gene id57511
Downstream gene id105370171
SNP gene ids
Upstream gene distance2267
Downstream gene distance269637
SNP risk allelers9603616-C
SNPsrs9603616
Merged0
SNP id current9603616
Contextdownstream_gene_variant
Intergenic1
Allele frequency0.68
P value0.000000000002
Pvalue mlog11.698970004336
P value text
Or beta1.1
%95 Ci[1.07-1.13]
PlatformAffymetrix, Illumina [up to 9739303] (imputed)
CNVN
Mapped traitrheumatoid arthritis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000685
Study accessionGCST002318
PubMed ID24390342
JournalNature
Linkwww.ncbi.nlm.nih.gov/pubmed/24390342
StudyGenetics of rheumatoid arthritis contributes to biology and drug discovery.
Disease/TraitRheumatoid arthritis
Initial sampleup to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls
Replication sampleup to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls
Region13q14.11
Chromosome idchr13
Chromosome position39793932
Reported geneCOG6
Mapped geneCOG6 - LOC105370171
Upstream gene id57511
Downstream gene id105370171
SNP gene ids
Upstream gene distance2267
Downstream gene distance269637
SNP risk allelers9603616-C
SNPsrs9603616
Merged0
SNP id current9603616
Contextdownstream_gene_variant
Intergenic1
Allele frequency0.66
P value0.00000000003
Pvalue mlog10.5228787452803
P value text(EA)
Or beta1.11
%95 Ci[1.07-1.14]
PlatformAffymetrix, Illumina [up to 9739303] (imputed)
CNVN
Mapped traitrheumatoid arthritis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000685
Study accessionGCST002318