Human SNP ID | rs9603616 |
---|---|
Human chromosome | chr13 |
Human SNP position | 39793932 |
Pig chromosome | chr11 |
Pig SNP position | 14929590 |
PubMed ID | 24390342 |
---|---|
Journal | Nature |
Link | www.ncbi.nlm.nih.gov/pubmed/24390342 |
Study | Genetics of rheumatoid arthritis contributes to biology and drug discovery. |
Disease/Trait | Rheumatoid arthritis |
Initial sample | up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls |
Replication sample | up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls |
Region | 13q14.11 |
Chromosome id | chr13 |
Chromosome position | 39793932 |
Reported gene | COG6 |
Mapped gene | COG6 - LOC105370171 |
Upstream gene id | 57511 |
Downstream gene id | 105370171 |
SNP gene ids | |
Upstream gene distance | 2267 |
Downstream gene distance | 269637 |
SNP risk allele | rs9603616-C |
SNPs | rs9603616 |
Merged | 0 |
SNP id current | 9603616 |
Context | downstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.68 |
P value | 0.000000000002 |
Pvalue mlog | 11.698970004336 |
P value text | |
Or beta | 1.1 |
%95 Ci | [1.07-1.13] |
Platform | Affymetrix, Illumina [up to 9739303] (imputed) |
CNV | N |
Mapped trait | rheumatoid arthritis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000685 |
Study accession | GCST002318 |
PubMed ID | 24390342 |
Journal | Nature |
Link | www.ncbi.nlm.nih.gov/pubmed/24390342 |
Study | Genetics of rheumatoid arthritis contributes to biology and drug discovery. |
Disease/Trait | Rheumatoid arthritis |
Initial sample | up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls |
Replication sample | up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls |
Region | 13q14.11 |
Chromosome id | chr13 |
Chromosome position | 39793932 |
Reported gene | COG6 |
Mapped gene | COG6 - LOC105370171 |
Upstream gene id | 57511 |
Downstream gene id | 105370171 |
SNP gene ids | |
Upstream gene distance | 2267 |
Downstream gene distance | 269637 |
SNP risk allele | rs9603616-C |
SNPs | rs9603616 |
Merged | 0 |
SNP id current | 9603616 |
Context | downstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.66 |
P value | 0.00000000003 |
Pvalue mlog | 10.5228787452803 |
P value text | (EA) |
Or beta | 1.11 |
%95 Ci | [1.07-1.14] |
Platform | Affymetrix, Illumina [up to 9739303] (imputed) |
CNV | N |
Mapped trait | rheumatoid arthritis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000685 |
Study accession | GCST002318 |