Human SNP ID | rs959903 |
---|---|
Human chromosome | chr4 |
Human SNP position | 25808474 |
Pig chromosome | chr8 |
Pig SNP position | 19930288 |
PubMed ID | 20708005 |
---|---|
Journal | Gastroenterology |
Link | www.ncbi.nlm.nih.gov/pubmed/20708005 |
Study | Genome-wide association study identifies variants associated with histologic features of nonalcoholic Fatty liver disease. |
Disease/Trait | Non-alcoholic fatty liver disease histology (other) |
Initial sample | 236 European ancestry cases |
Replication sample | NA |
Region | 4p15.2 |
Chromosome id | chr4 |
Chromosome position | 25808474 |
Reported gene | 23231 |
Mapped gene | SEL1L3 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 23231 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs959903-A |
SNPs | rs959903 |
Merged | 0 |
SNP id current | 959903 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.29 |
P value | 0.000007 |
Pvalue mlog | 5.15490195998574 |
P value text | (Ballon TT) |
Or beta | 3.81 |
%95 Ci | [NR] unit increase |
Platform | Illumina [324623] |
CNV | N |
Mapped trait | non-alcoholic fatty liver disease, cirrhosis of liver |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003095, http://www.ebi.ac.uk/efo/EFO_0001422 |
Study accession | GCST000765 |