SNP Detail For rs9596905
1.Mapping Information
Human SNP ID rs9596905
Human chromosome chr13
Human SNP position 54059238
Pig chromosome chr11
Pig SNP position 28355541
2.Annotation Information
PubMed ID23725790
JournalTwin Res Hum Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23725790
StudyGWAS of DNA methylation variation within imprinting control regions suggests parent-of-origin association.
Disease/TraitDNA methylation (variation)
Initial sample256 European ancestry individuals
Replication sample384 European ancestry individuals
Region13q14.3
Chromosome idchr13
Chromosome position54059238
Reported geneLINC00458
Mapped geneLINC00558 - LOC105370211
Upstream gene id100861552
Downstream gene id105370211
SNP gene ids
Upstream gene distance183119
Downstream gene distance37865
SNP risk allelers9596905-A
SNPsrs9596905
Merged0
SNP id current9596905
Contextintergenic_variant
Intergenic1
Allele frequency0.06
P value0.000002
Pvalue mlog5.69897000433601
P value text(IGF2-DMR)
Or beta
%95 Ci
PlatformIllumina [515966]
CNVN
Mapped traitDNA methylation
Mapped trait URIhttp://purl.obolibrary.org/obo/GO_0006306
Study accessionGCST002058