SNP Detail For rs9596837
1.Mapping Information
Human SNP ID rs9596837
Human chromosome chr13
Human SNP position 53683928
Pig chromosome chr11
Pig SNP position 28093293
2.Annotation Information
PubMed ID26220383
JournalEpilepsy Res
Linkwww.ncbi.nlm.nih.gov/pubmed/26220383
StudyGWAS identifies two susceptibility loci for lamotrigine-induced skin rash in patients with epilepsy.
Disease/TraitEpilepsy and lamotrigine-induced maculopapular eruptions
Initial sample34 Korean ancestry cases, 1,080 Korean ancestry healthy controls
Replication sampleNA
Region13q14.3
Chromosome idchr13
Chromosome position53683928
Reported geneLINC00558
Mapped geneLOC105370210 - LINC00558
Upstream gene id105370210
Downstream gene id100861552
SNP gene ids
Upstream gene distance119625
Downstream gene distance131491
SNP risk allelers9596837-?
SNPsrs9596837
Merged
SNP id current9596837
Contextintergenic_variant
Intergenic1
Allele frequency0.01
P value0.000000004
Pvalue mlog8.39794000867203
P value text
Or beta10.1
%95 Ci[NR]
PlatformAffymetrix [4893794] (imputed)
CNVN
Mapped traitresponse to lamotrigine, maculopapular eruption, epilepsy
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0007661, http://www.ebi.ac.uk/efo/EFO_1001253, http://www.ebi.ac.uk/efo/EFO_0000474
Study accessionGCST002949