Human SNP ID | rs9586179 |
---|---|
Human chromosome | chr13 |
Human SNP position | 103407737 |
Pig chromosome | chr11 |
Pig SNP position | 78914342 |
PubMed ID | 21829377 |
---|---|
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/21829377 |
Study | Genetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium. |
Disease/Trait | Phospholipid levels (plasma) |
Initial sample | 8,866 European ancestry individuals |
Replication sample | NA |
Region | 13q33.1 |
Chromosome id | chr13 |
Chromosome position | 103407737 |
Reported gene | SLC10A2 |
Mapped gene | LOC105370339 - LINC01309 |
Upstream gene id | 105370339 |
Downstream gene id | 104326190 |
SNP gene ids | |
Upstream gene distance | 11221 |
Downstream gene distance | 17463 |
SNP risk allele | rs9586179-T |
SNPs | rs9586179 |
Merged | 0 |
SNP id current | 9586179 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.0000004 |
Pvalue mlog | 6.39794000867203 |
P value text | (DPA) |
Or beta | 0.05 |
%95 Ci | [NR] % increase |
Platform | Affymetrix, Illumina [NR] |
CNV | N |
Mapped trait | phospholipid measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004639 |
Study accession | GCST001179 |