SNP Detail For rs9586179
1.Mapping Information
Human SNP ID rs9586179
Human chromosome chr13
Human SNP position 103407737
Pig chromosome chr11
Pig SNP position 78914342
2.Annotation Information
PubMed ID21829377
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/21829377
StudyGenetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.
Disease/TraitPhospholipid levels (plasma)
Initial sample8,866 European ancestry individuals
Replication sampleNA
Region13q33.1
Chromosome idchr13
Chromosome position103407737
Reported geneSLC10A2
Mapped geneLOC105370339 - LINC01309
Upstream gene id105370339
Downstream gene id104326190
SNP gene ids
Upstream gene distance11221
Downstream gene distance17463
SNP risk allelers9586179-T
SNPsrs9586179
Merged0
SNP id current9586179
Contextintergenic_variant
Intergenic1
Allele frequencyNR
P value0.0000004
Pvalue mlog6.39794000867203
P value text(DPA)
Or beta0.05
%95 Ci[NR] % increase
PlatformAffymetrix, Illumina [NR]
CNVN
Mapped traitphospholipid measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004639
Study accessionGCST001179