SNP Detail For rs9579199
1.Mapping Information
Human SNP ID rs9579199
Human chromosome chr13
Human SNP position 28590646
Pig chromosome chr11
Pig SNP position 5572114
2.Annotation Information
PubMed ID24080446
JournalEndocr Relat Cancer
Linkwww.ncbi.nlm.nih.gov/pubmed/24080446
StudyGenetic modifiers of menopausal hormone replacement therapy and breast cancer risk: a genome-wide interaction study.
Disease/TraitBreast cancer (menopausal hormone therapy interaction)
Initial sample2,920 European ancestry cases
Replication sample7,689 European ancestry cases, 9,266 European ancestry controls
Region13q12.3
Chromosome idchr13
Chromosome position28590646
Reported genePOMP
Mapped geneLOC105370135 - EIF4A1P7
Upstream gene id105370135
Downstream gene id341784
SNP gene ids
Upstream gene distance6302
Downstream gene distance8171
SNP risk allelers9579199-?
SNPsrs9579199
Merged0
SNP id current9579199
Contextintergenic_variant
Intergenic1
Allele frequency
P value0.000008
Pvalue mlog5.09691001300805
P value text
Or beta1.2048
%95 Ci[1.11-1.32]
PlatformIllumina [2500000] (imputed)
CNVN
Mapped traitbreast carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000305
Study accessionGCST002265