Human SNP ID | rs9579199 |
---|---|
Human chromosome | chr13 |
Human SNP position | 28590646 |
Pig chromosome | chr11 |
Pig SNP position | 5572114 |
PubMed ID | 24080446 |
---|---|
Journal | Endocr Relat Cancer |
Link | www.ncbi.nlm.nih.gov/pubmed/24080446 |
Study | Genetic modifiers of menopausal hormone replacement therapy and breast cancer risk: a genome-wide interaction study. |
Disease/Trait | Breast cancer (menopausal hormone therapy interaction) |
Initial sample | 2,920 European ancestry cases |
Replication sample | 7,689 European ancestry cases, 9,266 European ancestry controls |
Region | 13q12.3 |
Chromosome id | chr13 |
Chromosome position | 28590646 |
Reported gene | POMP |
Mapped gene | LOC105370135 - EIF4A1P7 |
Upstream gene id | 105370135 |
Downstream gene id | 341784 |
SNP gene ids | |
Upstream gene distance | 6302 |
Downstream gene distance | 8171 |
SNP risk allele | rs9579199-? |
SNPs | rs9579199 |
Merged | 0 |
SNP id current | 9579199 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | |
P value | 0.000008 |
Pvalue mlog | 5.09691001300805 |
P value text | |
Or beta | 1.2048 |
%95 Ci | [1.11-1.32] |
Platform | Illumina [2500000] (imputed) |
CNV | N |
Mapped trait | breast carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000305 |
Study accession | GCST002265 |