SNP Detail For rs9573163
1.Mapping Information
Human SNP ID rs9573163
Human chromosome chr13
Human SNP position 73334709
Pig chromosome chr11
Pig SNP position 50173011
2.Annotation Information
PubMed ID22158540
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22158540
StudyGenome-wide association study identifies five loci associated with susceptibility to pancreatic cancer in Chinese populations.
Disease/TraitPancreatic cancer
Initial sample981 Han Chinese ancestry cases, 1,991 Han Chinese ancestry controls
Replication sample2,603 Han Chinese ancestry cases, 2,877 Han Chinese ancestry controls
Region13q22.1
Chromosome idchr13
Chromosome position73334709
Reported geneNR
Mapped geneRNU6-66P - LINC00393
Upstream gene id100873770
Downstream gene id100874156
SNP gene ids
Upstream gene distance221691
Downstream gene distance122190
SNP risk allelers9573163-G
SNPsrs9573163
Merged0
SNP id current9573163
Contextregulatory_region_variant
Intergenic1
Allele frequency0.43
P value0.0000000000005
Pvalue mlog12.3010299956639
P value text
Or beta1.26
%95 Ci[1.18-1.34]
PlatformAffymetrix [666141]
CNVN
Mapped traitpancreatic carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0002618
Study accessionGCST001350