Human SNP ID | rs9573163 |
---|---|
Human chromosome | chr13 |
Human SNP position | 73334709 |
Pig chromosome | chr11 |
Pig SNP position | 50173011 |
PubMed ID | 22158540 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/22158540 |
Study | Genome-wide association study identifies five loci associated with susceptibility to pancreatic cancer in Chinese populations. |
Disease/Trait | Pancreatic cancer |
Initial sample | 981 Han Chinese ancestry cases, 1,991 Han Chinese ancestry controls |
Replication sample | 2,603 Han Chinese ancestry cases, 2,877 Han Chinese ancestry controls |
Region | 13q22.1 |
Chromosome id | chr13 |
Chromosome position | 73334709 |
Reported gene | NR |
Mapped gene | RNU6-66P - LINC00393 |
Upstream gene id | 100873770 |
Downstream gene id | 100874156 |
SNP gene ids | |
Upstream gene distance | 221691 |
Downstream gene distance | 122190 |
SNP risk allele | rs9573163-G |
SNPs | rs9573163 |
Merged | 0 |
SNP id current | 9573163 |
Context | regulatory_region_variant |
Intergenic | 1 |
Allele frequency | 0.43 |
P value | 0.0000000000005 |
Pvalue mlog | 12.3010299956639 |
P value text | |
Or beta | 1.26 |
%95 Ci | [1.18-1.34] |
Platform | Affymetrix [666141] |
CNV | N |
Mapped trait | pancreatic carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0002618 |
Study accession | GCST001350 |