Human SNP ID | rs9543325 |
---|---|
Human chromosome | chr13 |
Human SNP position | 73342491 |
Pig chromosome | chr11 |
Pig SNP position | 50181377 |
PubMed ID | 20101243 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/20101243 |
Study | A genome-wide association study identifies pancreatic cancer susceptibility loci on chromosomes 13q22.1, 1q32.1 and 5p15.33. |
Disease/Trait | Pancreatic cancer |
Initial sample | 3,851 European, Chinese and other ancestry cases, 3,934 European, Chinese and other ancestry controls |
Replication sample | NA |
Region | 13q22.1 |
Chromosome id | chr13 |
Chromosome position | 73342491 |
Reported gene | KLF12, KLF5 |
Mapped gene | RNU6-66P - LINC00393 |
Upstream gene id | 100873770 |
Downstream gene id | 100874156 |
SNP gene ids | |
Upstream gene distance | 229473 |
Downstream gene distance | 114408 |
SNP risk allele | rs9543325-C |
SNPs | rs9543325 |
Merged | 0 |
SNP id current | 9543325 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.37 |
P value | 0.00000000003 |
Pvalue mlog | 10.5228787452803 |
P value text | |
Or beta | 1.26 |
%95 Ci | [1.18-1.35] |
Platform | Illumina [551766] |
CNV | N |
Mapped trait | pancreatic carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0002618 |
Study accession | GCST000574 |
PubMed ID | 25086665 |
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/25086665 |
Study | Genome-wide association study identifies multiple susceptibility loci for pancreatic cancer. |
Disease/Trait | Pancreatic cancer |
Initial sample | 1,582 European ancestry cases, 5,203 European ancestry controls |
Replication sample | 6,101 European ancestry cases, 9,194 European ancestry controls |
Region | 13q22.1 |
Chromosome id | chr13 |
Chromosome position | 73342491 |
Reported gene | KLF12, KLF5 |
Mapped gene | RNU6-66P - LINC00393 |
Upstream gene id | 100873770 |
Downstream gene id | 100874156 |
SNP gene ids | |
Upstream gene distance | 229473 |
Downstream gene distance | 114408 |
SNP risk allele | rs9543325-? |
SNPs | rs9543325 |
Merged | 0 |
SNP id current | 9543325 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.00000000000004 |
Pvalue mlog | 13.397940008672 |
P value text | |
Or beta | 1.23 |
%95 Ci | [1.18-1.30] |
Platform | Illumina [608202] |
CNV | N |
Mapped trait | pancreatic carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0002618 |
Study accession | GCST002553 |
PubMed ID | 26098869 |
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/26098869 |
Study | Common variation at 2p13.3, 3q29, 7p13 and 17q25.1 associated with susceptibility to pancreatic cancer. |
Disease/Trait | Pancreatic cancer |
Initial sample | 7,638 cases, 7,364 controls |
Replication sample | 2,287 cases, 4,205 controls |
Region | 13q22.1 |
Chromosome id | chr13 |
Chromosome position | 73342491 |
Reported gene | KLF5, KLF12 |
Mapped gene | RNU6-66P - LINC00393 |
Upstream gene id | 100873770 |
Downstream gene id | 100874156 |
SNP gene ids | |
Upstream gene distance | 229473 |
Downstream gene distance | 114408 |
SNP risk allele | rs9543325-? |
SNPs | rs9543325 |
Merged | 0 |
SNP id current | 9543325 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.0000000002 |
Pvalue mlog | 9.69897000433601 |
P value text | |
Or beta | 1.24 |
%95 Ci | [1.16-1.32] |
Platform | Illumina [866891] (imputed) |
CNV | N |
Mapped trait | pancreatic carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0002618 |
Study accession | GCST002991 |