Human SNP ID | rs9527 |
---|---|
Human chromosome | chr10 |
Human SNP position | 102863821 |
Pig chromosome | chr14 |
Pig SNP position | 123810574 |
PubMed ID | 22383894 |
---|---|
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/22383894 |
Study | Genome-wide association study identifies chromosome 10q24.32 variants associated with arsenic metabolism and toxicity phenotypes in Bangladesh. |
Disease/Trait | Arsenic metabolism |
Initial sample | 1,313 Bangladeshi ancestry individuals |
Replication sample | NA |
Region | 10q24.32 |
Chromosome id | chr10 |
Chromosome position | 102863821 |
Reported gene | AS3MT, C10orf32 |
Mapped gene | C10orf32, C10orf32-ASMT |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 119032, 100528007 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs9527-? |
SNPs | rs9527 |
Merged | 0 |
SNP id current | 9527 |
Context | 3_prime_UTR_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.000000003 |
Pvalue mlog | 8.52287874528033 |
P value text | (DMA%) |
Or beta | |
%95 Ci | |
Platform | Illumina [259597] |
CNV | N |
Mapped trait | urinary arsenic measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004880 |
Study accession | GCST001421 |