SNP Detail For rs9527
1.Mapping Information
Human SNP ID rs9527
Human chromosome chr10
Human SNP position 102863821
Pig chromosome chr14
Pig SNP position 123810574
2.Annotation Information
PubMed ID22383894
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22383894
StudyGenome-wide association study identifies chromosome 10q24.32 variants associated with arsenic metabolism and toxicity phenotypes in Bangladesh.
Disease/TraitArsenic metabolism
Initial sample1,313 Bangladeshi ancestry individuals
Replication sampleNA
Region10q24.32
Chromosome idchr10
Chromosome position102863821
Reported geneAS3MT, C10orf32
Mapped geneC10orf32, C10orf32-ASMT
Upstream gene id
Downstream gene id
SNP gene ids119032, 100528007
Upstream gene distance
Downstream gene distance
SNP risk allelers9527-?
SNPsrs9527
Merged0
SNP id current9527
Context3_prime_UTR_variant
Intergenic0
Allele frequencyNR
P value0.000000003
Pvalue mlog8.52287874528033
P value text(DMA%)
Or beta
%95 Ci
PlatformIllumina [259597]
CNVN
Mapped traiturinary arsenic measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004880
Study accessionGCST001421