Human SNP ID | rs9513373 |
---|---|
Human chromosome | chr13 |
Human SNP position | 98214742 |
Pig chromosome | chr11 |
Pig SNP position | 74378292 |
PubMed ID | 25187353 |
---|---|
Journal | Nat Commun |
Link | www.ncbi.nlm.nih.gov/pubmed/25187353 |
Study | Clozapine-induced agranulocytosis is associated with rare HLA-DQB1 and HLA-B alleles. |
Disease/Trait | Clozapine-induced agranulocytosis |
Initial sample | 161 European ancestry cases, 1,196 European ancestry clozapine-treated and untreated controls |
Replication sample | NA |
Region | 13q32.2 |
Chromosome id | chr13 |
Chromosome position | 98214742 |
Reported gene | FARP1, RNF113B, MIR3170 |
Mapped gene | FARP1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 10160 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs9513373-C |
SNPs | rs9513373 |
Merged | 0 |
SNP id current | 9513373 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.02 |
P value | 0.000008 |
Pvalue mlog | 5.09691001300805 |
P value text | |
Or beta | 4.18 |
%95 Ci | [3.55-4.81] |
Platform | Illumina [8809853] (imputed) |
CNV | N |
Mapped trait | drug-induced agranulocytosis, response to clozapine |
Mapped trait URI | http://purl.obolibrary.org/obo/HP_0012235, http://purl.obolibrary.org/obo/GO_0097338 |
Study accession | GCST002595 |