SNP Detail For rs950169
1.Mapping Information
Human SNP ID rs950169
Human chromosome chr15
Human SNP position 84037709
Pig chromosome chr7
Pig SNP position 56500932
2.Annotation Information
PubMed ID25056061
JournalNature
Linkwww.ncbi.nlm.nih.gov/pubmed/25056061
StudyBiological insights from 108 schizophrenia-associated genetic loci.
Disease/TraitSchizophrenia
Initial sample32,405 European ancestry cases, 42,221 European ancestry controls, 1,235 European ancestry cases and 1,235 European ancestry controls from 1235 parent-offspring trios, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls
Replication sample1,513 European ancestry cases, 66,236 European ancestry controls
Region15q25.2
Chromosome idchr15
Chromosome position84037709
Reported geneADAMTSL3, GOLGA6L4, ZSCAN2
Mapped geneADAMTSL3
Upstream gene id
Downstream gene id
SNP gene ids57188
Upstream gene distance
Downstream gene distance
SNP risk allelers950169-C
SNPsrs950169
Merged0
SNP id current950169
Contextmissense_variant
Intergenic0
Allele frequency0.743
P value0.00000000002
Pvalue mlog10.698970004336
P value text
Or beta1.0834236
%95 Ci[1.06-1.11]
PlatformAffymetrix, Illumina [9005918] (imputed)
CNVN
Mapped traitschizophrenia
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000692
Study accessionGCST002539
PubMed ID26198764
JournalAm J Med Genet B Neuropsychiatr Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26198764
StudyGenome-wide association study of schizophrenia in Ashkenazi Jews.
Disease/TraitSchizophrenia
Initial sample592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls
Replication sampleNA
Region15q25.2
Chromosome idchr15
Chromosome position84037709
Reported geneNR
Mapped geneADAMTSL3
Upstream gene id
Downstream gene id
SNP gene ids57188
Upstream gene distance
Downstream gene distance
SNP risk allelers950169-C
SNPsrs950169
Merged0
SNP id current950169
Contextmissense_variant
Intergenic0
Allele frequencyNR
P value0.00000000003
Pvalue mlog10.5228787452803
P value text
Or beta1.0869565
%95 Ci[NR]
PlatformIllumina [7158791] (imputed)
CNVN
Mapped traitschizophrenia
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000692
Study accessionGCST003048