SNP Detail For rs9501030
1.Mapping Information
Human SNP ID rs9501030
Human chromosome chr6
Human SNP position 30831622
Pig chromosome chr7
Pig SNP position 27061643
2.Annotation Information
PubMed ID20848476
JournalInflamm Bowel Dis
Linkwww.ncbi.nlm.nih.gov/pubmed/20848476
StudyGenetic predictors of medically refractory ulcerative colitis.
Disease/TraitUlcerative colitis
Initial sample324 European ancestry medically refractory ulcerative colitis cases, 537 European ancestry non-medically refractory ulcerative colitis cases, 2,601 European ancestry controls
Replication sampleNA
Region6p21.33
Chromosome idchr6
Chromosome position30831622
Reported geneIER3, GTF2H4, FLOT1, VARS2, MIR588, DDR1
Mapped geneLINC00243 - LOC105375014
Upstream gene id401247
Downstream gene id105375014
SNP gene ids
Upstream gene distance963
Downstream gene distance7907
SNP risk allelers9501030-A
SNPsrs9501030
Merged0
SNP id current9501030
Contextupstream_gene_variant
Intergenic1
Allele frequencyNR
P value0.000004
Pvalue mlog5.39794000867203
P value text(Analysis II)
Or beta
%95 Ci
PlatformIllumina [313720]
CNVN
Mapped traitulcerative colitis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000729
Study accessionGCST000853