Human SNP ID | rs9501030 |
---|---|
Human chromosome | chr6 |
Human SNP position | 30831622 |
Pig chromosome | chr7 |
Pig SNP position | 27061643 |
PubMed ID | 20848476 |
---|---|
Journal | Inflamm Bowel Dis |
Link | www.ncbi.nlm.nih.gov/pubmed/20848476 |
Study | Genetic predictors of medically refractory ulcerative colitis. |
Disease/Trait | Ulcerative colitis |
Initial sample | 324 European ancestry medically refractory ulcerative colitis cases, 537 European ancestry non-medically refractory ulcerative colitis cases, 2,601 European ancestry controls |
Replication sample | NA |
Region | 6p21.33 |
Chromosome id | chr6 |
Chromosome position | 30831622 |
Reported gene | IER3, GTF2H4, FLOT1, VARS2, MIR588, DDR1 |
Mapped gene | LINC00243 - LOC105375014 |
Upstream gene id | 401247 |
Downstream gene id | 105375014 |
SNP gene ids | |
Upstream gene distance | 963 |
Downstream gene distance | 7907 |
SNP risk allele | rs9501030-A |
SNPs | rs9501030 |
Merged | 0 |
SNP id current | 9501030 |
Context | upstream_gene_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.000004 |
Pvalue mlog | 5.39794000867203 |
P value text | (Analysis II) |
Or beta | |
%95 Ci | |
Platform | Illumina [313720] |
CNV | N |
Mapped trait | ulcerative colitis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000729 |
Study accession | GCST000853 |