SNP Detail For rs9496398
1.Mapping Information
Human SNP ID rs9496398
Human chromosome chr6
Human SNP position 142501080
Pig chromosome chr1
Pig SNP position 25089344
2.Annotation Information
PubMed ID21507922
JournalClin Infect Dis
Linkwww.ncbi.nlm.nih.gov/pubmed/21507922
StudyDuffy-null-associated low neutrophil counts influence HIV-1 susceptibility in high-risk South African black women.
Disease/TraitNeutrophil count
Initial sample115 African ancestry HIV-negative individuals
Replication sampleNA
Region6q24.2
Chromosome idchr6
Chromosome position142501080
Reported geneAL161904.1, RP11-440G9.1
Mapped geneADGRG6 - LOC153910
Upstream gene id57211
Downstream gene id153910
SNP gene ids
Upstream gene distance54814
Downstream gene distance25375
SNP risk allelers9496398-?
SNPsrs9496398
Merged0
SNP id current9496398
Contextintergenic_variant
Intergenic1
Allele frequencyNR
P value0.000004
Pvalue mlog5.39794000867203
P value text
Or beta
%95 Ci
PlatformIllumina [874956]
CNVN
Mapped traitneutrophil count
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004833
Study accessionGCST001059