SNP Detail For rs9493873
1.Mapping Information
Human SNP ID rs9493873
Human chromosome chr6
Human SNP position 134255373
Pig chromosome chr1
Pig SNP position 33141235
2.Annotation Information
PubMed ID22610502
JournalHum Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22610502
StudyGenome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.
Disease/TraitImmune reponse to smallpox (secreted IFN-alpha)
Initial sampleUp to 512 European ancestry individuals, up to 199 African American individuals
Replication sampleNA
Region6q23.2
Chromosome idchr6
Chromosome position134255373
Reported geneSGK1
Mapped geneSGK1
Upstream gene id
Downstream gene id
SNP gene ids6446
Upstream gene distance
Downstream gene distance
SNP risk allelers9493873-G
SNPsrs9493873
Merged0
SNP id current9493873
Contextintron_variant
Intergenic0
Allele frequency
P value0.0000004
Pvalue mlog6.39794000867203
P value text(AA)
Or beta
%95 Ci
PlatformIllumina [NR]
CNVN
Mapped traitresponse to vaccine, cytokine measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004645, http://www.ebi.ac.uk/efo/EFO_0004873
Study accessionGCST001538