Human SNP ID | rs9491697 |
---|---|
Human chromosome | chr6 |
Human SNP position | 127134977 |
Pig chromosome | chr1 |
Pig SNP position | 39770321 |
PubMed ID | 23128233 |
---|---|
Journal | Nature |
Link | www.ncbi.nlm.nih.gov/pubmed/23128233 |
Study | Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease. |
Disease/Trait | Crohn__s disease |
Initial sample | Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls |
Replication sample | Up to 25,683 European ancestry cases, up to 17,015 European ancestry controls |
Region | 6q22.33 |
Chromosome id | chr6 |
Chromosome position | 127134977 |
Reported gene | intergenic |
Mapped gene | LOC105377988, RSPO3 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 105377988, 84870 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs9491697-G |
SNPs | rs9491697 |
Merged | 0 |
SNP id current | 9491697 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.439 |
P value | 0.0000000004 |
Pvalue mlog | 9.39794000867203 |
P value text | |
Or beta | 1.077 |
%95 Ci | [1.042-1.112] |
Platform | Affymetrix, Illumina [1230000] (imputed) |
CNV | N |
Mapped trait | Crohn__s disease |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000384 |
Study accession | GCST001729 |