SNP Detail For rs9491697
1.Mapping Information
Human SNP ID rs9491697
Human chromosome chr6
Human SNP position 127134977
Pig chromosome chr1
Pig SNP position 39770321
2.Annotation Information
PubMed ID23128233
JournalNature
Linkwww.ncbi.nlm.nih.gov/pubmed/23128233
StudyHost-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.
Disease/TraitCrohn__s disease
Initial sampleUp to 12,924 European ancestry cases, up to 21,442 European ancestry controls
Replication sampleUp to 25,683 European ancestry cases, up to 17,015 European ancestry controls
Region6q22.33
Chromosome idchr6
Chromosome position127134977
Reported geneintergenic
Mapped geneLOC105377988, RSPO3
Upstream gene id
Downstream gene id
SNP gene ids105377988, 84870
Upstream gene distance
Downstream gene distance
SNP risk allelers9491697-G
SNPsrs9491697
Merged0
SNP id current9491697
Contextintron_variant
Intergenic0
Allele frequency0.439
P value0.0000000004
Pvalue mlog9.39794000867203
P value text
Or beta1.077
%95 Ci[1.042-1.112]
PlatformAffymetrix, Illumina [1230000] (imputed)
CNVN
Mapped traitCrohn__s disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000384
Study accessionGCST001729