Human SNP ID | rs9485372 |
---|---|
Human chromosome | chr6 |
Human SNP position | 149287738 |
Pig chromosome | chr1 |
Pig SNP position | 18959925 |
PubMed ID | 22383897 |
---|---|
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/22383897 |
Study | Genome-wide association study in east Asians identifies novel susceptibility loci for breast cancer. |
Disease/Trait | Breast cancer |
Initial sample | 2,918 Chinese ancestry cases, 2,324 Chinese ancestry controls |
Replication sample | up to 16,173 East Asian ancestry cases, up to 18,282 East Asian ancestry controls |
Region | 6q25.1 |
Chromosome id | chr6 |
Chromosome position | 149287738 |
Reported gene | TAB2 |
Mapped gene | TAB2 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 23118 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs9485372-G |
SNPs | rs9485372 |
Merged | 0 |
SNP id current | 9485372 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.55 |
P value | 0.000000000004 |
Pvalue mlog | 11.397940008672 |
P value text | |
Or beta | 1.11 |
%95 Ci | [1.09-1.15] |
Platform | Affymetrix [690947] |
CNV | N |
Mapped trait | breast carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000305 |
Study accession | GCST001420 |