SNP Detail For rs9485372
1.Mapping Information
Human SNP ID rs9485372
Human chromosome chr6
Human SNP position 149287738
Pig chromosome chr1
Pig SNP position 18959925
2.Annotation Information
PubMed ID22383897
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22383897
StudyGenome-wide association study in east Asians identifies novel susceptibility loci for breast cancer.
Disease/TraitBreast cancer
Initial sample2,918 Chinese ancestry cases, 2,324 Chinese ancestry controls
Replication sampleup to 16,173 East Asian ancestry cases, up to 18,282 East Asian ancestry controls
Region6q25.1
Chromosome idchr6
Chromosome position149287738
Reported geneTAB2
Mapped geneTAB2
Upstream gene id
Downstream gene id
SNP gene ids23118
Upstream gene distance
Downstream gene distance
SNP risk allelers9485372-G
SNPsrs9485372
Merged0
SNP id current9485372
Contextintron_variant
Intergenic0
Allele frequency0.55
P value0.000000000004
Pvalue mlog11.397940008672
P value text
Or beta1.11
%95 Ci[1.09-1.15]
PlatformAffymetrix [690947]
CNVN
Mapped traitbreast carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000305
Study accessionGCST001420