Human SNP ID | rs9483788 |
---|---|
Human chromosome | chr6 |
Human SNP position | 135114363 |
Pig chromosome | chr1 |
Pig SNP position | 32403448 |
PubMed ID | 19862010 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/19862010 |
Study | Multiple loci influence erythrocyte phenotypes in the CHARGE Consortium. |
Disease/Trait | Other erythrocyte phenotypes |
Initial sample | 24,167 European ancestry individuals |
Replication sample | 9,456 European ancestry individuals |
Region | 6q23.3 |
Chromosome id | chr6 |
Chromosome position | 135114363 |
Reported gene | HBS1L, MYB |
Mapped gene | LOC105378010 - MYB |
Upstream gene id | 105378010 |
Downstream gene id | 4602 |
SNP gene ids | |
Upstream gene distance | 3940 |
Downstream gene distance | 66618 |
SNP risk allele | rs9483788-G |
SNPs | rs9483788 |
Merged | 0 |
SNP id current | 9483788 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 1E-47 |
Pvalue mlog | 47 |
P value text | (RBC) |
Or beta | 0 |
%95 Ci | [0.012-0.016] 1 M cells/mm^3 increase |
Platform | Affymetrix, Illumina [~ 2500000] (imputed) |
CNV | N |
Mapped trait | erythrocyte count |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004305 |
Study accession | GCST000500 |
PubMed ID | 19862010 |
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/19862010 |
Study | Multiple loci influence erythrocyte phenotypes in the CHARGE Consortium. |
Disease/Trait | Hematocrit |
Initial sample | 24,167 European ancestry individuals |
Replication sample | 9,456 European ancestry individuals |
Region | 6q23.3 |
Chromosome id | chr6 |
Chromosome position | 135114363 |
Reported gene | HBS1L, MYB |
Mapped gene | LOC105378010 - MYB |
Upstream gene id | 105378010 |
Downstream gene id | 4602 |
SNP gene ids | |
Upstream gene distance | 3940 |
Downstream gene distance | 66618 |
SNP risk allele | rs9483788-C |
SNPs | rs9483788 |
Merged | 0 |
SNP id current | 9483788 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.000000000000003 |
Pvalue mlog | 14.5228787452803 |
P value text | |
Or beta | 0.22 |
%95 Ci | [0.16-0.28] % increase |
Platform | Affymetrix, Illumina [~ 2500000] (imputed) |
CNV | N |
Mapped trait | hematocrit |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004348 |
Study accession | GCST000502 |