SNP Detail For rs9471576
1.Mapping Information
Human SNP ID rs9471576
Human chromosome chr6
Human SNP position 41336067
Pig chromosome chr7
Pig SNP position 41840088
2.Annotation Information
PubMed ID21116278
JournalMol Psychiatry
Linkwww.ncbi.nlm.nih.gov/pubmed/21116278
StudyGenome-wide association with MRI atrophy measures as a quantitative trait locus for Alzheimer__s disease.
Disease/TraitTotal ventricular volume
Initial sample424 European ancestry mild cognitive impairment cases, 236 European ancestry Alzheimer__s disease cases, 279 European ancestry controls
Replication sampleNA
Region6p21.1
Chromosome idchr6
Chromosome position41336067
Reported geneNCR2
Mapped geneNCR2
Upstream gene id
Downstream gene id
SNP gene ids9436
Upstream gene distance
Downstream gene distance
SNP risk allelers9471576-?
SNPsrs9471576
Merged0
SNP id current9471576
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.000002
Pvalue mlog5.69897000433601
P value text
Or beta0.009
%95 Ci[NR] unit increase
PlatformIllumina [478011]
CNVN
Mapped traitbrain volume measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0006930
Study accessionGCST000898