SNP Detail For rs9461741
1.Mapping Information
Human SNP ID rs9461741
Human chromosome chr6
Human SNP position 32402810
Pig chromosome chr7
Pig SNP position 29012939
2.Annotation Information
PubMed ID25569183
JournalNat Commun
Linkwww.ncbi.nlm.nih.gov/pubmed/25569183
StudyA genome-wide association study of marginal zone lymphoma shows association to the HLA region.
Disease/TraitMarginal zone lymphoma
Initial sample825 European ancestry cases, 6,221 European ancestry controls
Replication sample456 European ancestry cases, 906 European ancestry controls
Region6p21.32
Chromosome idchr6
Chromosome position32402810
Reported geneBTNL2
Mapped geneBTNL2, LOC101929163
Upstream gene id
Downstream gene id
SNP gene ids56244, 101929163
Upstream gene distance
Downstream gene distance
SNP risk allelers9461741-C
SNPsrs9461741
Merged0
SNP id current9461741
Contextintron_variant
Intergenic0
Allele frequency0.018
P value0.000000000000004
Pvalue mlog14.397940008672
P value text
Or beta2.66
%95 Ci[2.08-3.39]
PlatformIllumina [611856]
CNVN
Mapped traitmarginal zone B-cell lymphoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_1000630
Study accessionGCST002742