Human SNP ID | rs9461741 |
---|---|
Human chromosome | chr6 |
Human SNP position | 32402810 |
Pig chromosome | chr7 |
Pig SNP position | 29012939 |
PubMed ID | 25569183 |
---|---|
Journal | Nat Commun |
Link | www.ncbi.nlm.nih.gov/pubmed/25569183 |
Study | A genome-wide association study of marginal zone lymphoma shows association to the HLA region. |
Disease/Trait | Marginal zone lymphoma |
Initial sample | 825 European ancestry cases, 6,221 European ancestry controls |
Replication sample | 456 European ancestry cases, 906 European ancestry controls |
Region | 6p21.32 |
Chromosome id | chr6 |
Chromosome position | 32402810 |
Reported gene | BTNL2 |
Mapped gene | BTNL2, LOC101929163 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 56244, 101929163 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs9461741-C |
SNPs | rs9461741 |
Merged | 0 |
SNP id current | 9461741 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.018 |
P value | 0.000000000000004 |
Pvalue mlog | 14.397940008672 |
P value text | |
Or beta | 2.66 |
%95 Ci | [2.08-3.39] |
Platform | Illumina [611856] |
CNV | N |
Mapped trait | marginal zone B-cell lymphoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_1000630 |
Study accession | GCST002742 |