Human SNP ID | rs9445023 |
---|---|
Human chromosome | chr6 |
Human SNP position | 92812416 |
Pig chromosome | chr1 |
Pig SNP position | 67676841 |
PubMed ID | 25194280 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/25194280 |
Study | Genome-wide association study identifies three susceptibility loci for laryngeal squamous cell carcinoma in the Chinese population. |
Disease/Trait | Laryngeal squamous cell carcinoma |
Initial sample | 993 Chinese ancestry cases, 1,995 Chinese ancestry controls |
Replication sample | 2,398 Chinese ancestry cases, 2,804 Chinese ancestry controls |
Region | 6q16.1 |
Chromosome id | chr6 |
Chromosome position | 92812416 |
Reported gene | EPHA7 |
Mapped gene | LOC102724665 - LOC105377897 |
Upstream gene id | 102724665 |
Downstream gene id | 105377897 |
SNP gene ids | |
Upstream gene distance | 167611 |
Downstream gene distance | 167183 |
SNP risk allele | rs9445023-? |
SNPs | rs9445023 |
Merged | 0 |
SNP id current | 9445023 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.88 |
P value | 0.0000007 |
Pvalue mlog | 6.15490195998574 |
P value text | |
Or beta | 1.32 |
%95 Ci | [1.18-1.47] |
Platform | Affymetrix [662108] |
CNV | N |
Mapped trait | laryngeal squamous cell carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0006352 |
Study accession | GCST002597 |