SNP Detail For rs9445023
1.Mapping Information
Human SNP ID rs9445023
Human chromosome chr6
Human SNP position 92812416
Pig chromosome chr1
Pig SNP position 67676841
2.Annotation Information
PubMed ID25194280
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25194280
StudyGenome-wide association study identifies three susceptibility loci for laryngeal squamous cell carcinoma in the Chinese population.
Disease/TraitLaryngeal squamous cell carcinoma
Initial sample993 Chinese ancestry cases, 1,995 Chinese ancestry controls
Replication sample2,398 Chinese ancestry cases, 2,804 Chinese ancestry controls
Region6q16.1
Chromosome idchr6
Chromosome position92812416
Reported geneEPHA7
Mapped geneLOC102724665 - LOC105377897
Upstream gene id102724665
Downstream gene id105377897
SNP gene ids
Upstream gene distance167611
Downstream gene distance167183
SNP risk allelers9445023-?
SNPsrs9445023
Merged0
SNP id current9445023
Contextintergenic_variant
Intergenic1
Allele frequency0.88
P value0.0000007
Pvalue mlog6.15490195998574
P value text
Or beta1.32
%95 Ci[1.18-1.47]
PlatformAffymetrix [662108]
CNVN
Mapped traitlaryngeal squamous cell carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0006352
Study accessionGCST002597