Human SNP ID | rs944289 |
---|---|
Human chromosome | chr14 |
Human SNP position | 36180040 |
Pig chromosome | chr7 |
Pig SNP position | 68783630 |
PubMed ID | 19198613 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/19198613 |
Study | Common variants on 9q22.33 and 14q13.3 predispose to thyroid cancer in European populations. |
Disease/Trait | Thyroid cancer |
Initial sample | 192 European ancestry cases, 37,196 European ancestry controls |
Replication sample | 432 European ancestry cases, 1,727 European ancestry controls |
Region | 14q13.3 |
Chromosome id | chr14 |
Chromosome position | 36180040 |
Reported gene | NKX2-1 |
Mapped gene | PTCSC3 - LOC101927199 |
Upstream gene id | 100886964 |
Downstream gene id | 101927199 |
SNP gene ids | |
Upstream gene distance | 3389 |
Downstream gene distance | 14165 |
SNP risk allele | rs944289-T |
SNPs | rs944289 |
Merged | 0 |
SNP id current | 944289 |
Context | upstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.57 |
P value | 0.000000002 |
Pvalue mlog | 8.69897000433601 |
P value text | |
Or beta | 1.37 |
%95 Ci | [1.24-1.52] |
Platform | Illumina [304083] |
CNV | N |
Mapped trait | thyroid carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0002892 |
Study accession | GCST000335 |