SNP Detail For rs944289
1.Mapping Information
Human SNP ID rs944289
Human chromosome chr14
Human SNP position 36180040
Pig chromosome chr7
Pig SNP position 68783630
2.Annotation Information
PubMed ID19198613
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/19198613
StudyCommon variants on 9q22.33 and 14q13.3 predispose to thyroid cancer in European populations.
Disease/TraitThyroid cancer
Initial sample192 European ancestry cases, 37,196 European ancestry controls
Replication sample432 European ancestry cases, 1,727 European ancestry controls
Region14q13.3
Chromosome idchr14
Chromosome position36180040
Reported geneNKX2-1
Mapped genePTCSC3 - LOC101927199
Upstream gene id100886964
Downstream gene id101927199
SNP gene ids
Upstream gene distance3389
Downstream gene distance14165
SNP risk allelers944289-T
SNPsrs944289
Merged0
SNP id current944289
Contextupstream_gene_variant
Intergenic1
Allele frequency0.57
P value0.000000002
Pvalue mlog8.69897000433601
P value text
Or beta1.37
%95 Ci[1.24-1.52]
PlatformIllumina [304083]
CNVN
Mapped traitthyroid carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0002892
Study accessionGCST000335