Human SNP ID | rs9437689 |
---|---|
Human chromosome | chr1 |
Human SNP position | 95083980 |
Pig chromosome | chr4 |
Pig SNP position | 134077337 |
PubMed ID | 22359512 |
---|---|
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/22359512 |
Study | Genome-wide association study identifies novel loci associated with circulating phospho- and sphingolipid concentrations. |
Disease/Trait | Phospholipid levels (plasma) |
Initial sample | 4,034 European ancestry individuals |
Replication sample | NA |
Region | 1p21.3 |
Chromosome id | chr1 |
Chromosome position | 95083980 |
Reported gene | ALG14 |
Mapped gene | ALG14 - TMEM56 |
Upstream gene id | 199857 |
Downstream gene id | 148534 |
SNP gene ids | |
Upstream gene distance | 11016 |
Downstream gene distance | 8537 |
SNP risk allele | rs9437689-? |
SNPs | rs9437689 |
Merged | 0 |
SNP id current | 9437689 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.00000005 |
Pvalue mlog | 7.30102999566398 |
P value text | (proportions) |
Or beta | 0.7 |
%95 Ci | [NR] % increase |
Platform | Illumina [NR] (imputed) |
CNV | N |
Mapped trait | phospholipid measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004639 |
Study accession | GCST001414 |