SNP Detail For rs9409154
1.Mapping Information
Human SNP ID rs9409154
Human chromosome chr9
Human SNP position 115440437
Pig chromosome chr1
Pig SNP position 287168678
2.Annotation Information
PubMed ID22589738
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22589738
StudyGenome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.
Disease/TraitVisceral adipose tissue adjusted for BMI
Initial sample5,560 European ancestry female individuals, 4,997 European ancestry male individuals
Replication sampleNA
Region9q33.1
Chromosome idchr9
Chromosome position115440437
Reported geneintergenic
Mapped geneDEC1 - LOC105376235
Upstream gene id50514
Downstream gene id105376235
SNP gene ids
Upstream gene distance37793
Downstream gene distance156221
SNP risk allelers9409154-C
SNPsrs9409154
Merged0
SNP id current9409154
Contextintergenic_variant
Intergenic1
Allele frequency0.12
P value0.000002
Pvalue mlog5.69897000433601
P value text(Women)
Or beta
%95 Ci
PlatformAffymetrix, Illumina [2500000] (imputed)
CNVN
Mapped traitvisceral adipose tissue measurement, body mass index
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004765, http://www.ebi.ac.uk/efo/EFO_0004340
Study accessionGCST001523