Human SNP ID | rs9405098 |
---|---|
Human chromosome | chr6 |
Human SNP position | 32411959 |
Pig chromosome | chr7 |
Pig SNP position | 29021602 |
PubMed ID | 23321320 |
---|---|
Journal | J Hepatol |
Link | www.ncbi.nlm.nih.gov/pubmed/23321320 |
Study | A genome-wide association study of HCV-induced liver cirrhosis in the Japanese population identifies novel susceptibility loci at the MHC region. |
Disease/Trait | Hepatitis C induced liver cirrhosis |
Initial sample | 682 Japanese ancestry cases, 1,045 Japanese ancestry controls |
Replication sample | 936 Japanese ancestry cases, 3,809 Japanese ancestry controls |
Region | 6p21.32 |
Chromosome id | chr6 |
Chromosome position | 32411959 |
Reported gene | intergenic |
Mapped gene | BTNL2 - HLA-DRA |
Upstream gene id | 56244 |
Downstream gene id | 3122 |
SNP gene ids | |
Upstream gene distance | 3080 |
Downstream gene distance | 27883 |
SNP risk allele | rs9405098-A |
SNPs | rs9405098 |
Merged | 0 |
SNP id current | 9405098 |
Context | upstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.253 |
P value | 0.0000000001 |
Pvalue mlog | 10 |
P value text | |
Or beta | 1.37 |
%95 Ci | [1.24-1.51] |
Platform | Illumina [431618] |
CNV | N |
Mapped trait | hepatitis C induced liver cirrhosis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005129 |
Study accession | GCST001815 |