SNP Detail For rs9405098
1.Mapping Information
Human SNP ID rs9405098
Human chromosome chr6
Human SNP position 32411959
Pig chromosome chr7
Pig SNP position 29021602
2.Annotation Information
PubMed ID23321320
JournalJ Hepatol
Linkwww.ncbi.nlm.nih.gov/pubmed/23321320
StudyA genome-wide association study of HCV-induced liver cirrhosis in the Japanese population identifies novel susceptibility loci at the MHC region.
Disease/TraitHepatitis C induced liver cirrhosis
Initial sample682 Japanese ancestry cases, 1,045 Japanese ancestry controls
Replication sample936 Japanese ancestry cases, 3,809 Japanese ancestry controls
Region6p21.32
Chromosome idchr6
Chromosome position32411959
Reported geneintergenic
Mapped geneBTNL2 - HLA-DRA
Upstream gene id56244
Downstream gene id3122
SNP gene ids
Upstream gene distance3080
Downstream gene distance27883
SNP risk allelers9405098-A
SNPsrs9405098
Merged0
SNP id current9405098
Contextupstream_gene_variant
Intergenic1
Allele frequency0.253
P value0.0000000001
Pvalue mlog10
P value text
Or beta1.37
%95 Ci[1.24-1.51]
PlatformIllumina [431618]
CNVN
Mapped traithepatitis C induced liver cirrhosis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005129
Study accessionGCST001815