SNP Detail For rs9402743
1.Mapping Information
Human SNP ID rs9402743
Human chromosome chr6
Human SNP position 135679896
Pig chromosome chr1
Pig SNP position 31861605
2.Annotation Information
PubMed ID26502338
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26502338
StudyGenetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.
Disease/TraitSystemic lupus erythematosus
Initial sample5,201 European ancestry cases, 9,066 European ancestry controls
Replication sample2,018 European ancestry cases, 6,925 European ancestry controls
Region6q23.3
Chromosome idchr6
Chromosome position135679896
Reported geneLINC00271
Mapped geneLINC00271
Upstream gene id
Downstream gene id
SNP gene ids100131814
Upstream gene distance
Downstream gene distance
SNP risk allelers9402743-G
SNPsrs9402743
Merged
SNP id current9402743
Contextintron_variant
Intergenic0
Allele frequency
P value0.000005
Pvalue mlog5.30102999566398
P value text
Or beta1.1
%95 Ci[1.06鈥?.15]
PlatformIllumina [644674]
CNVN
Mapped traitsystemic lupus erythematosus
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0002690
Study accessionGCST003155