Human SNP ID | rs9402743 |
---|---|
Human chromosome | chr6 |
Human SNP position | 135679896 |
Pig chromosome | chr1 |
Pig SNP position | 31861605 |
PubMed ID | 26502338 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/26502338 |
Study | Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus. |
Disease/Trait | Systemic lupus erythematosus |
Initial sample | 5,201 European ancestry cases, 9,066 European ancestry controls |
Replication sample | 2,018 European ancestry cases, 6,925 European ancestry controls |
Region | 6q23.3 |
Chromosome id | chr6 |
Chromosome position | 135679896 |
Reported gene | LINC00271 |
Mapped gene | LINC00271 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 100131814 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs9402743-G |
SNPs | rs9402743 |
Merged | |
SNP id current | 9402743 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | |
P value | 0.000005 |
Pvalue mlog | 5.30102999566398 |
P value text | |
Or beta | 1.1 |
%95 Ci | [1.06鈥?.15] |
Platform | Illumina [644674] |
CNV | N |
Mapped trait | systemic lupus erythematosus |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0002690 |
Study accession | GCST003155 |