Human SNP ID | rs9402686 |
---|---|
Human chromosome | chr6 |
Human SNP position | 135106679 |
Pig chromosome | chr1 |
Pig SNP position | 32412680 |
PubMed ID | 19820697 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/19820697 |
Study | A genome-wide meta-analysis identifies 22 loci associated with eight hematological parameters in the HaemGen consortium. |
Disease/Trait | Hematological parameters |
Initial sample | 4,627 European ancestry individuals |
Replication sample | 9,316 European ancestry individuals |
Region | 6q23.3 |
Chromosome id | chr6 |
Chromosome position | 135106679 |
Reported gene | HBS1L, MYB |
Mapped gene | HBS1L - LOC105378010 |
Upstream gene id | 10767 |
Downstream gene id | 105378010 |
SNP gene ids | |
Upstream gene distance | 51781 |
Downstream gene distance | 166 |
SNP risk allele | rs9402686-A |
SNPs | rs9402686 |
Merged | 0 |
SNP id current | 9402686 |
Context | upstream_gene_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 7E-42 |
Pvalue mlog | 41.1549019599857 |
P value text | (MCV) |
Or beta | 0.82 |
%95 Ci | [0.70-0.94] fl increase |
Platform | Affymetrix, Illumina [~ 2110000] (imputed) |
CNV | N |
Mapped trait | mean corpuscular volume |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004526 |
Study accession | GCST000498 |
PubMed ID | 25096241 |
Journal | Hum Mol Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/25096241 |
Study | Trans-ethnic meta-analysis of white blood cell phenotypes. |
Disease/Trait | White blood cell count |
Initial sample | 16,843 Japanese ancestry individuals, 19,509 European ancestry individuals, 16,388 African American individuals |
Replication sample | NA |
Region | 6q23.3 |
Chromosome id | chr6 |
Chromosome position | 135106679 |
Reported gene | NR |
Mapped gene | HBS1L - LOC105378010 |
Upstream gene id | 10767 |
Downstream gene id | 105378010 |
SNP gene ids | |
Upstream gene distance | 51781 |
Downstream gene distance | 166 |
SNP risk allele | rs9402686-? |
SNPs | rs9402686 |
Merged | 0 |
SNP id current | 9402686 |
Context | upstream_gene_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.000000000004 |
Pvalue mlog | 11.397940008672 |
P value text | |
Or beta | 0.0138 |
%95 Ci | [0.0099-0.0177] unit decrease |
Platform | Illumina [NR] (imputed) |
CNV | N |
Mapped trait | leukocyte count |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004308 |
Study accession | GCST002556 |